Gene Page: FAM46A

Summary
GeneID  55603
Symbol  FAM46A
Synonyms  C6orf37|FLJ20037|FLJ31495|XTP11
Description  family with sequence similarity 46, member A
See related  HGNC:18345|MIM:611357|Ensembl:ENSG00000112773|HPRD:13311|
Locus tag  RP1-300G12.3
Gene type  protein-coding
Map location  6q14
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ZDHHC170.870.87
DNAJC100.860.87
NBN0.860.87
GUF10.860.86
AGGF10.850.85
DNAJC130.850.85
SNX130.850.86
AKAP100.850.85
UBR10.840.86
GARNL10.840.85
Top 10 negatively co-expressed genes
HIGD1B-0.64-0.63
MT-CO2-0.64-0.62
AF347015.21-0.64-0.58
FXYD1-0.63-0.61
AF347015.31-0.62-0.60
IFI27-0.60-0.59
MT-CYB-0.60-0.57
CSAG1-0.59-0.58
AF347015.8-0.59-0.58
AF347015.2-0.59-0.55
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-103/107367136771Ahsa-miR-103brainAGCAGCAUUGUACAGGGCUAUGA
hsa-miR-107brainAGCAGCAUUGUACAGGGCUAUCA
miR-125/3518878931Ahsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-1337227281Ahsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-1352733m8hsa-miR-135aUAUGGCUUUUUAUUCCUAUGUGA
hsa-miR-135bUAUGGCUUUUCAUUCCUAUGUG
miR-142-3p15141520m8hsa-miR-142-3pUGUAGUGUUUCCUACUUUAUGGA
miR-18128882894m8hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-1833433491Ahsa-miR-183UAUGGCACUGGUAGAAUUCACUG
miR-186353635421Ahsa-miR-186CAAAGAAUUCUCCUUUUGGGCUU
miR-19161216191A,m8hsa-miR-19aUGUGCAAAUCUAUGCAAAACUGA
hsa-miR-19bUGUGCAAAUCCAUGCAAAACUGA
miR-1947958011Ahsa-miR-194UGUAACAGCAACUCCAUGUGGA
miR-203.131371Ahsa-miR-203UGAAAUGUUUAGGACCACUAG
miR-2134383444m8hsa-miR-21brainUAGCUUAUCAGACUGAUGUUGA
hsa-miR-590GAGCUUAUUCAUAAAAGUGCAG
miR-223385938661A,m8hsa-miR-223UGUCAGUUUGUCAAAUACCCC
miR-23158415911A,m8hsa-miR-23abrainAUCACAUUGCCAGGGAUUUCC
hsa-miR-23bbrainAUCACAUUGCCAGGGAUUACC
miR-30-3p189819041Ahsa-miR-30a-3pCUUUCAGUCGGAUGUUUGCAGC
hsa-miR-30e-3pCUUUCAGUCGGAUGUUUACAGC
miR-30-5p390539121A,m8hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-323158315901A,m8hsa-miR-323brainGCACAUUACACGGUCGACCUCU
miR-34/449226922761A,m8hsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-36232383244m8hsa-miR-362AAUCCUUGGAACCUAGGUGUGAGU
miR-369-3p34093415m8hsa-miR-369-3pAAUAAUACAUGGUUGAUCUUU
hsa-miR-369-3pAAUAAUACAUGGUUGAUCUUU
miR-37416481654m8hsa-miR-374UUAUAAUACAACCUGAUAAGUG
miR-410165016561Ahsa-miR-410AAUAUAACACAGAUGGCCUGU
hsa-miR-410AAUAUAACACAGAUGGCCUGU
miR-4957937991Ahsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
miR-542-3p170217081Ahsa-miR-542-3pUGUGACAGAUUGAUAACUGAAA
miR-97247311A,m8hsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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