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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: C9orf86

Summary

GeneID

55684

Symbol

C9orf86

Synonyms

FLJ10101|FLJ13045|Parf|RBEL1|bA216L13.9|pp8875

Description

chromosome 9 open reading frame 86

Locus tag

RP11-216L13.9

Gene type

protein-coding

Map location

9q34.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 2.48

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0005515

protein binding

IPI

12970870 |16189514

GO:0005525

GTP binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007264

small GTPase mediated signal transduction

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
C19orf57	MGC11271 \| MGC149720	chromosome 19 open reading frame 57	Two-hybrid	BioGRID	16189514
CALCOCO2	MGC17318 \| NDP52	calcium binding and coiled-coil domain 2	Two-hybrid	BioGRID	16189514
MDFI	I-MF \| I-mfa	MyoD family inhibitor	Affinity Capture-Western Two-hybrid	BioGRID	16189514
RBPMS	HERMES	RNA binding protein with multiple splicing	Two-hybrid	BioGRID	16189514
SPINK7	ECG2 \| ECRG2 \| MGC133105 \| MGC133106	serine peptidase inhibitor, Kazal type 7 (putative)	ECRG2 interacts with FLJ10101.	BIND	12970870
SPINK7	ECG2 \| ECRG2 \| MGC133105 \| MGC133106	serine peptidase inhibitor, Kazal type 7 (putative)	-	HPRD,BioGRID	12970870

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-122	626	633	1A,m8	hsa-miR-122a	UGGAGUGUGACAAUGGUGUUUGU
miR-125/351	279	286	1A,m8	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	279	286	1A,m8	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-30-5p	321	328	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.