Summary ?
GeneID55700
SymbolMAP7D1
SynonymsPARCC1|RPRC1
DescriptionMAP7 domain containing 1
ReferenceHGNC:HGNC:25514|Ensembl:ENSG00000116871|HPRD:07666|Vega:OTTHUMG00000007714
Gene typeprotein-coding
Map location1p34.3
Pascal p-value4.422E-5
Sherlock p-value0.999
SupportCompositeSet
Darnell FMRP targets

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
GenePearson's Correlation Spearman's Correlation
TRIM390.960.95
LSM70.910.93
RPL360.910.85
RPS15P50.900.85
PQBP10.900.91
POLR2F0.900.87
RPL280.900.83
RPL80.890.90
MYL60.890.87
MRPS340.890.87
Top 10 negatively co-expressed genes
GenePearson's Correlation Spearman's Correlation
ABCB1-0.58-0.67
AF347015.27-0.57-0.72
AF347015.33-0.57-0.71
AF347015.15-0.57-0.74
AF347015.26-0.56-0.76
ABCG2-0.56-0.63
MT-CYB-0.56-0.72
AF347015.8-0.56-0.72
EPB41L2-0.56-0.66
PTPRB-0.55-0.62

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
CHARAFE BREAST CANCER LUMINAL VS MESENCHYMAL DN 460312All SZGR 2.0 genes in this pathway
UDAYAKUMAR MED1 TARGETS DN 240171All SZGR 2.0 genes in this pathway
GRAESSMANN APOPTOSIS BY DOXORUBICIN UP 1142669All SZGR 2.0 genes in this pathway
LASTOWSKA NEUROBLASTOMA COPY NUMBER DN 800473All SZGR 2.0 genes in this pathway
WEI MYCN TARGETS WITH E BOX 795478All SZGR 2.0 genes in this pathway
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY DN 382224All SZGR 2.0 genes in this pathway
SCHAEFFER PROSTATE DEVELOPMENT 6HR DN 514330All SZGR 2.0 genes in this pathway
BILD HRAS ONCOGENIC SIGNATURE 261166All SZGR 2.0 genes in this pathway
HUANG DASATINIB RESISTANCE UP 8153All SZGR 2.0 genes in this pathway
SWEET LUNG CANCER KRAS DN 435289All SZGR 2.0 genes in this pathway
FORTSCHEGGER PHF8 TARGETS DN 784464All SZGR 2.0 genes in this pathway
PHONG TNF RESPONSE VIA P38 COMPLETE 227151All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1013303361Ahsa-miR-101UACAGUACUGUGAUAACUGAAG
miR-141/200a5385451A,m8hsa-miR-141UAACACUGUCUGGUAAAGAUGG
hsa-miR-200aUAACACUGUCUGGUAACGAUGU
miR-1443293361A,m8hsa-miR-144UACAGUAUAGAUGAUGUACUAG
miR-181411481A,m8hsa-miR-18aUAAGGUGCAUCUAGUGCAGAUA
hsa-miR-18bUAAGGUGCAUCUAGUGCAGUUA
miR-233233291Ahsa-miR-23abrainAUCACAUUGCCAGGGAUUUCC
hsa-miR-23bbrainAUCACAUUGCCAGGGAUUACC