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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: PCDHGB1

Summary

GeneID

56104

Symbol

PCDHGB1

Synonyms

MGC119466|MGC119467|MGC119469|PCDH-GAMMA-B1

Description

protocadherin gamma subfamily B, 1

See related

HGNC:8708|MIM:606299|HPRD:09389|

Locus tag

Gene type

protein-coding

Map location

5q31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0032

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

SOX10

0.94

0.91

PADI2

0.93

HSPA2

0.92

0.93

PLEKHB1

0.91

0.94

PRR18

0.91

0.93

CNP

0.91

0.86

RTKN

0.90

0.93

SEMA3B

0.90

0.87

PMP22

0.89

0.91

DAAM2

0.89

0.94

Top 10 negatively co-expressed genes

NR2C2AP

-0.64

-0.78

POLB

-0.63

-0.78

DUSP12

-0.63

-0.74

NKIRAS2

-0.63

-0.68

TRNAU1AP

-0.63

-0.74

STMN1

-0.62

-0.74

MED19

-0.62

-0.75

ING4

-0.62

-0.73

STMN2

-0.62

-0.73

CRMP1

-0.61

-0.70

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005509

calcium ion binding

IEA

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007155

cell adhesion

IEA

GO:0007156

homophilic cell adhesion

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016021

integral to membrane

IEA

GO:0005886

plasma membrane

IEA

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-133	1194	1201	1A,m8	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	1194	1201	1A,m8	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-135	903	909	1A	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
miR-135	903	909	1A	hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-153	191	197	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-448	190	197	1A,m8	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-7	317	323	1A	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.