Gene Page: PCDHGA11

Summary
GeneID  56105
Symbol  PCDHGA11
Synonyms  PCDH-GAMMA-A11
Description  protocadherin gamma subfamily A, 11
See related  HGNC:8698|MIM:606298|Ensembl:ENSG00000214567|HPRD:09388|
Locus tag  -
Gene type  protein-coding
Map location  5q31
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
XPO50.970.96
TNPO30.970.97
C9orf970.970.96
GPN10.970.96
SLC39A60.970.96
RRN30.970.95
KDM5B0.960.96
GART0.960.94
YTHDF20.960.95
ZBTB50.960.93
Top 10 negatively co-expressed genes
HLA-F-0.75-0.81
AIFM3-0.74-0.81
C5orf53-0.74-0.78
AF347015.31-0.74-0.90
AF347015.27-0.73-0.89
MT-CO2-0.73-0.91
FXYD1-0.73-0.91
S100B-0.72-0.85
AF347015.33-0.72-0.89
TSC22D4-0.72-0.82
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005509calcium ion bindingIEA-
GO:0005515protein bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007155cell adhesionIEA-
GO:0007156homophilic cell adhesionIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0016021integral to membraneIEA-
GO:0005886plasma membraneIEA-
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-133119412011A,m8hsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-1359039091Ahsa-miR-135aUAUGGCUUUUUAUUCCUAUGUGA
hsa-miR-135bUAUGGCUUUUCAUUCCUAUGUG
miR-1531911971Ahsa-miR-153UUGCAUAGUCACAAAAGUGA
miR-4481901971A,m8hsa-miR-448UUGCAUAUGUAGGAUGUCCCAU
miR-73173231Ahsa-miR-7SZUGGAAGACUAGUGAUUUUGUUG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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