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| GeneID |
56146
|
| Symbol |
PCDHA2
|
| Synonyms |
PCDH-ALPHA2
|
| Description |
protocadherin alpha 2 |
| See related |
HGNC:8668|MIM:606308|Ensembl:ENSG00000204969|HPRD:07320| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
5q31 |
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| Gene set name |
Method of gene set |
Evidence |
Info |
| GSMA_I | genome scan meta-analysis | Psr: 0.0032 | | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 | |
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| General Gene Expression (microarray) ? |
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| Gene Expression in Brain Regions (new) |
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| |
| Top co-expressed genes in Brain Regions (new) |
|
| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| ZNF193 | 0.93 | 0.82 | | |
| ZNF34 | 0.91 | 0.82 | | |
| ZNF3 | 0.90 | 0.84 | | |
| ZNF232 | 0.88 | 0.86 | | |
| ZFP37 | 0.88 | 0.80 | | |
| U2AF1 | 0.88 | 0.83 | | |
| PGBD1 | 0.88 | 0.83 | | |
| ZNF669 | 0.88 | 0.81 | | |
| ZNF642 | 0.88 | 0.81 | | |
| ZNF311 | 0.88 | 0.79 | | |
Top 10 negatively co-expressed genes | | FBXO2 | -0.69 | -0.70 | | |
| AIFM3 | -0.69 | -0.73 | | |
| HLA-F | -0.69 | -0.70 | | |
| ALDOC | -0.68 | -0.70 | | |
| PTH1R | -0.67 | -0.70 | | |
| LDHD | -0.67 | -0.66 | | |
| CLU | -0.66 | -0.67 | | |
| TSC22D4 | -0.65 | -0.70 | | |
| AF347015.27 | -0.65 | -0.78 | | |
| TINAGL1 | -0.65 | -0.70 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005509 | calcium ion binding | IEA | | - |
| GO:0005515 | protein binding | IEA | | - |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0007399 | nervous system development | TAS | neurite (GO term level: 5) | 10380929 |
| GO:0007155 | cell adhesion | TAS | | 10380929 |
| GO:0007156 | homophilic cell adhesion | IEA | | - |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005886 | plasma membrane | IEA | | - |
| GO:0005887 | integral to plasma membrane | TAS | | 10380929 |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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