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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: KCTD16

Summary

GeneID

57528

Symbol

KCTD16

Synonyms

DKFZp781A1155|KIAA1317|MGC138167

Description

potassium channel tetramerisation domain containing 16

Locus tag

Gene type

protein-coding

Map location

5q32

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0032

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01718

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00459

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

SH2B3

0.84

0.83

SPRED2

0.79

0.80

ETV5

0.79

0.78

BRI3BP

0.79

0.77

FMN2

0.78

PER2

0.77

0.76

PIP5K1C

0.77

0.76

ZBTB4

0.77

0.81

EPN2

0.77

0.80

DAGLA

0.77

0.80

Top 10 negatively co-expressed genes

C8orf59

-0.47

-0.49

RPS27L

-0.46

-0.50

AL050337.1

-0.45

-0.49

C1orf54

-0.44

-0.42

HSPE1

-0.43

-0.41

GNG11

-0.43

AF347015.21

-0.43

-0.36

UQCRB

-0.42

-0.43

SYCP3

-0.42

-0.46

RPL31

-0.42

-0.47

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0005249

voltage-gated potassium channel activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006813

potassium ion transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0008076

voltage-gated potassium channel complex

IEA

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	175	182	1A,m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	175	182	1A,m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-18	156	162	1A	hsa-miR-18a	UAAGGUGCAUCUAGUGCAGAUA
miR-18	156	162	1A	hsa-miR-18b	UAAGGUGCAUCUAGUGCAGUUA
miR-218	541	548	1A,m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-34b	136	143	1A,m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-96	1523	1529	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.