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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CTDSP1

Summary

GeneID

58190

Symbol

CTDSP1

Synonyms

NLIIF|SCP1

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

Locus tag

Gene type

protein-coding

Map location

2q35

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00916

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01016

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003674

molecular_function

10967134

GO:0004721

phosphoprotein phosphatase activity

IEA

GO:0016787

hydrolase activity

IEA

GO:0016791

phosphatase activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008150

biological_process

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

TAS

10967134

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CDCA3	GRCC8 \| MGC2577 \| TOME-1	cell division cycle associated 3	Two-hybrid	BioGRID	16189514
GTF2F1	BTF4 \| RAP74 \| TF2F1 \| TFIIF	general transcription factor IIF, polypeptide 1, 74kDa	-	HPRD	12721286
MBP	MGC99675	myelin basic protein	-	HPRD	14743429
POLR2A	MGC75453 \| POLR2 \| POLRA \| RPB1 \| RPBh1 \| RPO2 \| RPOL2 \| RpIILS \| hRPB220 \| hsRPB1	polymerase (RNA) II (DNA directed) polypeptide A, 220kDa	Biochemical Activity	BioGRID	12721286
REST	NRSF \| XBR	RE1-silencing transcription factor	SCP1 interacts with REST.	BIND	15681389

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	207	213	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
				hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
				hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
				hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-182	304	310	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-183	742	749	1A,m8	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-22	1224	1230	m8	hsa-miR-22^brain	AAGCUGCCAGUUGAAGAACUGU
miR-96	1348	1354	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC
miR-96	1348	1354	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.