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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: RORC

Summary

GeneID

6097

Symbol

RORC

Synonyms

MGC129539|NR1F3|RORG|RZR-GAMMA|RZRG|TOR

Description

RAR-related orphan receptor C

Locus tag

Gene type

protein-coding

Map location

1q21

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0235

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00814

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

H3F3A

0.81

0.71

RP11-392P7.1

0.77

0.73

AC021224.1

0.75

0.79

RPL36A

0.73

0.78

RPL22

0.73

0.72

WASH4P

0.69

0.38

RPS27

0.69

0.83

OSGEP

0.68

0.50

RP11-244J10.1

0.67

0.75

RPL39

0.67

0.82

Top 10 negatively co-expressed genes

HLA-E

-0.39

-0.56

SLC2A1

-0.36

-0.49

ESAM

-0.36

-0.48

MMRN2

-0.35

-0.47

BSG

-0.35

-0.44

LTBR

-0.34

-0.41

ZNF385A

-0.34

-0.51

VASN

-0.34

-0.52

EPAS1

-0.34

-0.57

CLEC14A

-0.34

-0.44

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003700

transcription factor activity

IEA

GO:0003707

steroid hormone receptor activity

IEA

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	407	413	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.