Gene Page

Gene Page: ZFYVE20

Summary

GeneID

64145

Symbol

ZFYVE20

Synonyms

FLJ34993|MGC126210|Rabenosyn-5

Description

zinc finger, FYVE domain containing 20

Locus tag

Gene type

protein-coding

Map location

3p24.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.006

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0672

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008270

zinc ion binding

NAS

11062261

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016197

endosome transport

NAS

11062261

GO:0015031

protein transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0005768

endosome

NAS

11062261

GO:0005886

plasma membrane

IEA

GO:0031901

early endosome membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
RAB4A	HRES-1/RAB4 \| RAB4	RAB4A, member RAS oncogene family	-	HPRD	11788822
RAB5A	RAB5	RAB5A, member RAS oncogene family	-	HPRD,BioGRID	11062261
RAB5C	MGC117217 \| MGC138857 \| RAB5CL \| RABL	RAB5C, member RAS oncogene family	Reconstituted Complex	BioGRID	12493736
VPS45	H1 \| H1VPS45 \| VPS45A \| VPS45B \| VPS54A \| VSP45 \| VSP45A	vacuolar protein sorting 45 homolog (S. cerevisiae)	-	HPRD	11062261

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-130/301	3649	3655	1A	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-140	3201	3207	1A	hsa-miR-140^brain	AGUGGUUUUACCCUAUGGUAG
miR-200bc/429	400	407	1A,m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-204/211	1789	1796	1A,m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
miR-204/211	1789	1796	1A,m8	hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-217	397	404	1A,m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-30-5p	1823	1829	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-369-3p	402	409	1A,m8	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	403	409	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-381	3665	3671	m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-486	1826	1832	1A	hsa-miR-486	UCCUGUACUGAGCUGCCCCGAG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.