Gene Page

Gene Page: RAPH1

Summary

GeneID

65059

Symbol

RAPH1

Synonyms

Description

Ras association (RalGDS/AF-6) and pleckstrin homology domains 1

Locus tag

Gene type

protein-coding

Map location

2q33

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007165

signal transduction

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0042995

cell projection

IEA

axon (GO term level: 4)

GO:0005856

cytoskeleton

IEA

GO:0005737

cytoplasm

IEA

GO:0005886

plasma membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DNMBP	KIAA1010 \| TUBA	dynamin binding protein	-	HPRD	14506234
ENAH	ENA \| MENA \| NDPP1	enabled homolog (Drosophila)	Affinity Capture-Western	BioGRID	15469845
VASP	-	vasodilator-stimulated phosphoprotein	Reconstituted Complex	BioGRID	15469845

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-101	829	835	m8	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-124/506	4423	4429	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
				hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
				hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-133	346	352	1A	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	346	352	1A	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-145	4909	4916	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-19	5041	5047	1A	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	5041	5047	1A	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-203.1	5319	5325	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-219	43	49	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-29	4480	4486	1A	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-30-5p	5021	5027	m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-329	171	177	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-338	5454	5460	1A	hsa-miR-338^brain	UCCAGCAUCAGUGAUUUUGUUGA
miR-363	5348	5354	1A	hsa-miR-363	AUUGCACGGUAUCCAUCUGUAA
miR-383	56	62	1A	hsa-miR-383^brain	AGAUCAGAAGGUGAUUGUGGCU
miR-496	4281	4287	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-543	484	490	m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-544	4521	4527	1A	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.