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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: TROVE2

Summary

GeneID

6738

Symbol

TROVE2

Synonyms

RO60|SSA2

Description

TROVE domain family, member 2

Locus tag

RP11-101E13.3

Gene type

protein-coding

Map location

1q31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.364

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

KCNK1

0.91

0.88

MAST3

0.91

0.79

SIRPA

0.90

0.92

PACSIN1

0.90

0.87

SYNPO

0.90

0.86

COBL

0.90

0.87

STIM1

0.90

0.83

SYT12

0.90

0.91

VIPR1

0.89

KCNIP3

0.89

Top 10 negatively co-expressed genes

TUBB2B

-0.61

-0.66

KIAA1949

-0.61

-0.59

BCL7C

-0.59

-0.71

TRAF4

-0.59

-0.70

DYNLT1

-0.59

-0.77

YBX1

-0.59

-0.64

PPP1R14B

-0.58

-0.74

ZNF311

-0.58

-0.57

SH2B2

-0.57

-0.66

RPS8

-0.57

-0.75

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003723

RNA binding

IEA

GO:0003723

RNA binding

TAS

3200833

GO:0005515

protein binding

IPI

17353931

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006383

transcription from RNA polymerase III promoter

TAS

3200833

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IDA

18029348

GO:0005737

cytoplasm

IDA

18029348

GO:0005737

cytoplasm

IEA

GO:0030529

ribonucleoprotein complex

IEA

GO:0030529

ribonucleoprotein complex

TAS

3200833

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
NCL	C23 \| FLJ45706	nucleolin	-	HPRD	12096904
PUF60	FIR \| FLJ31379 \| RoBPI \| SIAHBP1	poly-U binding splicing factor 60KDa	Affinity Capture-MS	BioGRID	17353931
RAB11FIP5	DKFZp434H018 \| GAF1 \| KIAA0857 \| RIP11 \| pp75	RAB11 family interacting protein 5 (class I)	-	HPRD	10545525
TRIM21	RNF81 \| RO52 \| SSA \| SSA1	tripartite motif-containing 21	-	HPRD	11251884

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-128	437	443	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	437	443	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-139	216	222	m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-27	437	443	m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	437	443	m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-320	570	576	m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.