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| GeneID |
6746
|
| Symbol |
SSR2
|
| Synonyms |
DKFZp686F19123|HSD25|TLAP|TRAP-BETA|TRAPB
|
| Description |
signal sequence receptor, beta (translocon-associated protein beta) |
| See related |
HGNC:11324|MIM:600867|Ensembl:ENSG00000163479|HPRD:02923| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
1q21-q23 |
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|
| Gene set name |
Method of gene set |
Evidence |
Info |
| GSMA_I | genome scan meta-analysis | Psr: 0.0235 | | | GSMA_IIA | genome scan meta-analysis (All samples) | Psr: 0.00814 | |
|
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| General Gene Expression (microarray) ? |
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| Gene Expression in Brain Regions (new) |
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| Top co-expressed genes in Brain Regions (new) |
|
| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| ACTN1 | 0.93 | 0.86 | | |
| NPTN | 0.92 | 0.88 | | |
| SMAD3 | 0.91 | 0.90 | | |
| PACSIN1 | 0.91 | 0.86 | | |
| PTPRN | 0.91 | 0.86 | | |
| SLC35F3 | 0.90 | 0.88 | | |
| AC105206.1 | 0.90 | 0.87 | | |
| MAST3 | 0.90 | 0.91 | | |
| SAPS1 | 0.90 | 0.89 | | |
| TMEM130 | 0.90 | 0.89 | | |
Top 10 negatively co-expressed genes | | BCL7C | -0.52 | -0.61 | | |
| RBMX2 | -0.50 | -0.57 | | |
| C9orf46 | -0.49 | -0.53 | | |
| RPS8 | -0.48 | -0.56 | | |
| EXOSC8 | -0.48 | -0.49 | | |
| FAM36A | -0.48 | -0.44 | | |
| RPS19P3 | -0.48 | -0.60 | | |
| RPL27A | -0.47 | -0.61 | | |
| RPS23 | -0.47 | -0.53 | | |
| RPL38 | -0.47 | -0.64 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005048 | signal sequence binding | TAS | | 7789174 |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0006613 | cotranslational protein targeting to membrane | TAS | | 7789174 |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005789 | endoplasmic reticulum membrane | IEA | | - |
| GO:0005783 | endoplasmic reticulum | IEA | | - |
| GO:0005783 | endoplasmic reticulum | TAS | | 7789174 |
| GO:0016020 | membrane | IEA | | - |
| GO:0016021 | integral to membrane | IEA | | - |
| GO:0016021 | integral to membrane | TAS | | 7789174 |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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