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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: STX3

Summary

GeneID

6809

Symbol

STX3

Synonyms

STX3A

Description

syntaxin 3

Locus tag

Gene type

protein-coding

Map location

11q12.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 5

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005484

SNAP receptor activity

IEA

GO:0050544

arachidonic acid binding

ISS

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0031175

neurite development

ISS

neuron, axon, neurite, dendrite (GO term level: 10)

GO:0006836

neurotransmitter transport

IEA

neuron, Neurotransmitter (GO term level: 5)

GO:0006886

intracellular protein transport

IEA

GO:0016192

vesicle-mediated transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0043005

neuron projection

ISS

neuron, axon, neurite, dendrite (GO term level: 5)

GO:0031201

SNARE complex

ISS

neuron, Synap (GO term level: 6)

GO:0030426

growth cone

ISS

axon, dendrite (GO term level: 5)

GO:0005794

Golgi apparatus

IDA

18029348

GO:0005634

nucleus

IDA

18029348

GO:0005737

cytoplasm

IDA

18029348

GO:0005773

vacuole

TAS

16339081

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

GO:0016324

apical plasma membrane

IDA

16339081

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
SNAP23	HsT17016 \| SNAP23A \| SNAP23B	synaptosomal-associated protein, 23kDa	-	HPRD	9701566
SNAP23	HsT17016 \| SNAP23A \| SNAP23B	synaptosomal-associated protein, 23kDa	-	HPRD,BioGRID	12828989
SNAP25	FLJ23079 \| RIC-4 \| RIC4 \| SEC9 \| SNAP \| SNAP-25 \| bA416N4.2 \| dJ1068F16.2	synaptosomal-associated protein, 25kDa	-	HPRD,BioGRID	7768895
SNAP29	CEDNIK \| FLJ21051 \| SNAP-29	synaptosomal-associated protein, 29kDa	-	HPRD,BioGRID	9852078
STXBP1	EIEE4 \| MUNC18-1 \| UNC18 \| hUNC18 \| rbSec1	syntaxin binding protein 1	-	HPRD	9045631
STXBP1	EIEE4 \| MUNC18-1 \| UNC18 \| hUNC18 \| rbSec1	syntaxin binding protein 1	Reconstituted Complex	BioGRID	7768895
STXBP2	Hunc18b \| MUNC18-2 \| UNC18-2 \| UNC18B \| pp10122	syntaxin binding protein 2	Reconstituted Complex	BioGRID	7768895
STXBP2	Hunc18b \| MUNC18-2 \| UNC18-2 \| UNC18B \| pp10122	syntaxin binding protein 2	-	HPRD	7598732 \|9701566 \|10788461 \|12198139
SYT1	DKFZp781D2042 \| P65 \| SVP65 \| SYT	synaptotagmin I	Reconstituted Complex	BioGRID	10397765
SYT4	HsT1192 \| KIAA1342	synaptotagmin IV	-	HPRD	10397765
SYT7	IPCA-7 \| MGC150517 \| PCANAP7 \| SYT-VII	synaptotagmin VII	-	HPRD	7791877
TRPC3	TRP3	transient receptor potential cation channel, subfamily C, member 3	-	HPRD	15623527
TXLNA	DKFZp451J0118 \| IL14 \| MGC118870 \| MGC118871 \| RP4-622L5.4 \| TXLN	taxilin alpha	Reconstituted Complex	BioGRID	12558796
VAMP2	FLJ11460 \| SYB2 \| VAMP-2	vesicle-associated membrane protein 2 (synaptobrevin 2)	Two-hybrid	BioGRID	12828989
VAMP3	CEB	vesicle-associated membrane protein 3 (cellubrevin)	-	HPRD	9614185 \|9701566
VAMP3	CEB	vesicle-associated membrane protein 3 (cellubrevin)	Two-hybrid	BioGRID	12828989
VAMP7	SYBL1 \| TI-VAMP \| VAMP-7	vesicle-associated membrane protein 7	-	HPRD	9614185
VAMP8	EDB	vesicle-associated membrane protein 8 (endobrevin)	-	HPRD	10336434

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	366	373	1A,m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-103/107	17	23	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	17	23	1A	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-146	208	214	m8	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
miR-146	208	214	m8	hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
miR-148/152	20	27	1A,m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-30-3p	23	29	m8	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	23	29	m8	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-378	959	965	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-496	1820	1826	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.