Gene Page: UBP1

Summary
GeneID  7342
Symbol  UBP1
Synonyms  DKFZp686L1745|LBP-1B|LBP-1a|LBP1A|LBP1B
Description  upstream binding protein 1 (LBP-1a)
See related  HGNC:12507|MIM:609784|Ensembl:ENSG00000153560|HPRD:10291|
Locus tag  -
Gene type  protein-coding
Map location  3p22.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.006 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ATP5A10.940.93
COPS30.920.88
DRG10.910.86
PMPCB0.910.87
CIAPIN10.910.88
PSMA10.910.87
FH0.900.90
C1QBP0.900.86
RAN0.900.91
HSPA80.900.90
Top 10 negatively co-expressed genes
AF347015.2-0.72-0.67
AF347015.8-0.71-0.66
MT-CO2-0.71-0.64
AF347015.26-0.70-0.67
MT-CYB-0.70-0.65
AF347015.33-0.68-0.65
AF347015.15-0.68-0.64
AF347015.31-0.68-0.63
AF347015.18-0.67-0.70
AF347015.21-0.67-0.63
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003700transcription factor activityTAS8114710 
GO:0003714transcription corepressor activityTAS8114710 
GO:0016566specific transcriptional repressor activityTAS8114710 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006357regulation of transcription from RNA polymerase II promoterTAS8114710 
GO:0016481negative regulation of transcriptionTAS8114710 
GO:0019079viral genome replicationTAS8114710 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusTAS8114710 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
TFCP2L1CRTR1 | LBP-9 | LBP9transcription factor CP2-like 1-HPRD15471945 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP 1382904All SZGR genes in this pathway
HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN 11671All SZGR genes in this pathway
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN 800473All SZGR genes in this pathway
NUYTTEN_NIPP1_TARGETS_UP 769437All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_UP 1037673All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS 734436All SZGR genes in this pathway
MORI_PRE_BI_LYMPHOCYTE_DN 7749All SZGR genes in this pathway
KAUFFMANN_DNA_REPLICATION_GENES 14787All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_INCIPIENT_DN 165106All SZGR genes in this pathway
LEE_METASTASIS_AND_ALTERNATIVE_SPLICING_DN 4531All SZGR genes in this pathway
HIRSCH_CELLULAR_TRANSFORMATION_SIGNATURE_DN 10367All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_24HR_DN 505328All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_8D 882506All SZGR genes in this pathway
SUZUKI_CTCFL_TARGETS_UP 125All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-138191219191A,m8hsa-miR-138brainAGCUGGUGUUGUGAAUC
miR-1813403471A,m8hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-219108210881Ahsa-miR-219brainUGAUUGUCCAAACGCAAUUCU
miR-34/4491711781A,m8hsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-365360366m8hsa-miR-365UAAUGCCCCUAAAAAUCCUUAU
miR-37752591A,m8hsa-miR-377AUCACACAAAGGCAACUUUUGU
miR-4941031101A,m8hsa-miR-494brainUGAAACAUACACGGGAAACCUCUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.