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| GeneID |
7399
|
| Symbol |
USH2A
|
| Synonyms |
RP39|US2|USH2|USHERIN|dJ1111A8.1
|
| Description |
Usher syndrome 2A (autosomal recessive, mild) |
| See related |
HGNC:12601|MIM:608400|Ensembl:ENSG00000042781|HPRD:02042|HPRD:09759| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
1q41 |
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| Gene set name |
Method of gene set |
Evidence |
Info |
| Expression | Expression | P value: 1.371 | | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 | |
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| General Gene Expression (microarray) ? |
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| Gene Expression in Brain Regions (new) |
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| Top co-expressed genes in Brain Regions (new) |
|
| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| QRICH2 | 0.95 | 0.93 | | |
| TAF1C | 0.92 | 0.90 | | |
| ZNF785 | 0.92 | 0.92 | | |
| ADAMTS10 | 0.92 | 0.86 | | |
| NINL | 0.92 | 0.87 | | |
| GIGYF1 | 0.92 | 0.92 | | |
| SFRS8 | 0.92 | 0.93 | | |
| CCDC142 | 0.91 | 0.90 | | |
| RBM5 | 0.91 | 0.90 | | |
| AC093838.4 | 0.90 | 0.89 | | |
Top 10 negatively co-expressed genes | | AF347015.31 | -0.64 | -0.74 | | |
| AF347015.27 | -0.62 | -0.71 | | |
| MT-CO2 | -0.61 | -0.71 | | |
| IFI27 | -0.61 | -0.68 | | |
| B2M | -0.60 | -0.65 | | |
| C5orf53 | -0.60 | -0.61 | | |
| COPZ2 | -0.59 | -0.65 | | |
| MT-CYB | -0.59 | -0.67 | | |
| HIGD1B | -0.58 | -0.70 | | |
| AF347015.33 | -0.58 | -0.65 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005518 | collagen binding | IDA | | 14676276 |
| GO:0030165 | PDZ domain binding | IPI | | 16434480 |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0007605 | sensory perception of sound | IMP | | 10090909 |
| GO:0050896 | response to stimulus | IEA | | - |
| GO:0045494 | photoreceptor cell maintenance | IMP | | 10090909 |
| GO:0048496 | maintenance of organ identity | IMP | | 15671307 |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0042995 | cell projection | IEA | axon (GO term level: 4) | - |
| GO:0005576 | extracellular region | IEA | | - |
| GO:0005604 | basement membrane | IDA | | 12433396 |
| GO:0005737 | cytoplasm | IDA | | 16434480 |
| GO:0016021 | integral to membrane | IEA | | - |
| GO:0005886 | plasma membrane | IEA | | - |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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