Gene Page

Gene Page: VCAM1

Summary

GeneID

7412

Symbol

VCAM1

Synonyms

CD106|DKFZp779G2333|INCAM-100|MGC99561

Description

vascular cell adhesion molecule 1

Locus tag

Gene type

protein-coding

Map location

1p32-p31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005178

integrin binding

IDA

1377228

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0022614

membrane to membrane docking

IEP

12082081

GO:0007157

heterophilic cell adhesion

IDA

1715889

GO:0042102

positive regulation of T cell proliferation

IDA

1381355

GO:0050901

leukocyte tethering or rolling

IEP

2688898

GO:0030183

B cell differentiation

1715889

GO:0044419

interspecies interaction between organisms

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0030175

filopodium

IDA

axon (GO term level: 5)

12082081

GO:0005615

extracellular space

IDA

9290466

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

GO:0009897

external side of plasma membrane

IDA

1377228

GO:0005902

microvillus

IDA

12082081

GO:0045177

apical part of cell

IDA

12082081

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CCL17	A-152E5.3 \| ABCD-2 \| MGC138271 \| MGC138273 \| SCYA17 \| TARC	chemokine (C-C motif) ligand 17	-	HPRD,BioGRID	12193695
CCL22	A-152E5.1 \| ABCD-1 \| DC/B-CK \| MDC \| MGC34554 \| SCYA22 \| STCP-1	chemokine (C-C motif) ligand 22	-	HPRD,BioGRID	12193695
EZR	CVIL \| CVL \| DKFZp762H157 \| FLJ26216 \| MGC1584 \| VIL2	ezrin	-	HPRD,BioGRID	12082081
IL13	ALRH \| BHR1 \| IL-13 \| MGC116786 \| MGC116788 \| MGC116789 \| P600	interleukin 13	-	HPRD,BioGRID	7521694
ITGAD	ADB2 \| CD11D \| FLJ39841	integrin, alpha D	-	HPRD,BioGRID	10438935
ITGB1	CD29 \| FNRB \| GPIIA \| MDF2 \| MSK12 \| VLA-BETA \| VLAB	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	-	HPRD	12097820
ITGB7	-	integrin, beta 7	-	HPRD	12682249
MSN	-	moesin	-	HPRD,BioGRID	12082081
MSN	-	moesin	-	HPRD	7884872\|12082081
SEC61B	-	Sec61 beta subunit	VCAM1 interacts with SEC61B. This interaction was modeled on a demonstrated interaction between human VCAM1 and canine SEC61B.	BIND	16015337

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-496	263	269	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.