Gene Page: CHPF

Summary
GeneID  79586
Symbol  CHPF
Synonyms  CHSY2|CSS2|FLJ22678
Description  chondroitin polymerizing factor
See related  HGNC:24291|MIM:610405|Ensembl:ENSG00000123989|HPRD:10829|
Locus tag  -
Gene type  protein-coding
Map location  2q35
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00916 
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.01016 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
SLITRK50.850.90
RTN4RL10.840.88
TSC22D10.820.86
RTN10.820.85
ARHGAP200.810.87
KIF3C0.810.84
HIVEP20.810.88
CECR60.810.87
ATCAY0.810.85
AP3B20.810.85
Top 10 negatively co-expressed genes
BDH2-0.65-0.68
MT-CO2-0.64-0.65
AF347015.31-0.64-0.64
AF347015.26-0.63-0.63
ACSF2-0.63-0.67
MT-CYB-0.62-0.63
AP002478.3-0.62-0.68
AF347015.33-0.62-0.61
APOE-0.62-0.66
FXYD1-0.62-0.63
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI15231747 
GO:0016740transferase activityIEA-
GO:0046872metal ion bindingIEA-
GO:0047238glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activityIEA-
GO:0050510N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activityIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005794Golgi apparatusIEA-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
EXOSC6EAP4 | MTR3 | Mtr3p | hMtr3p | p11exosome component 6-HPRD15231747 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1393193251Ahsa-miR-139brainUCUACAGUGCACGUGUCU
miR-2142342401Ahsa-miR-214brainACAGCAGGCACAGACAGGCAG
miR-485-5p7581m8hsa-miR-485-5pAGAGGCUGGCCGUGAUGAAUUC
miR-503232238m8hsa-miR-503UAGCAGCGGGAACAGUUCUGCAG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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