Gene Page

Gene Page: HMBOX1

Summary

GeneID

79618

Symbol

HMBOX1

Synonyms

FLJ21616|HNF1LA|PBHNF

Description

homeobox containing 1

Locus tag

Gene type

protein-coding

Map location

8p21.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.00057

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.03086

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003700

transcription factor activity

IEA

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	272	278	1A	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-133	703	709	m8	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	703	709	m8	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-146	311	318	1A,m8	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
miR-146	311	318	1A,m8	hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
miR-18	43	50	1A,m8	hsa-miR-18a	UAAGGUGCAUCUAGUGCAGAUA
miR-18	43	50	1A,m8	hsa-miR-18b	UAAGGUGCAUCUAGUGCAGUUA
miR-200bc/429	179	186	1A,m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-25/32/92/363/367	518	524	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-27	135	141	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	135	141	1A	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-324-5p	405	411	1A	hsa-miR-324-5p	CGCAUCCCCUAGGGCAUUGGUGU
miR-34b	687	693	m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-377	665	671	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-381	103	109	m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.