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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: PABPN1

Summary

GeneID

8106

Symbol

PABPN1

Synonyms

OPMD|PAB2|PABP2

Description

poly(A) binding protein, nuclear 1

Locus tag

Gene type

protein-coding

Map location

14q11.2-q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.047

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

TAS

9462747

GO:0005515

protein binding

IPI

15169763

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000398

nuclear mRNA splicing, via spliceosome

EXP

12226669

GO:0006936

muscle contraction

TAS

9462747

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005654

nucleoplasm

EXP

10205180

GO:0005730

nucleolus

IDA

18029348

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CARM1	PRMT4	coactivator-associated arginine methyltransferase 1	Biochemical Activity	BioGRID	11850402
DNAJB4	DNAJW \| DjB4 \| HLJ1	DnaJ (Hsp40) homolog, subfamily B, member 4	Two-hybrid	BioGRID	11371506
MYOD1	MYF3 \| MYOD \| PUM \| bHLHc1	myogenic differentiation 1	Affinity Capture-Western	BioGRID	11371506
SMARCA4	BAF190 \| BRG1 \| FLJ39786 \| SNF2 \| SNF2-BETA \| SNF2L4 \| SNF2LB \| SWI2 \| hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	Two-hybrid	BioGRID	11371506
SNW1	Bx42 \| MGC119379 \| NCOA-62 \| PRPF45 \| Prp45 \| SKIIP \| SKIP	SNW domain containing 1	-	HPRD,BioGRID	11371506
TNPO1	IPO2 \| KPNB2 \| MIP \| MIP1 \| TRN	transportin 1	-	HPRD,BioGRID	10688363

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-130/301	648	654	1A	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-144	130	136	m8	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-329	6	12	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-331	817	823	m8	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA
miR-433-3p	847	853	1A	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.