Gene Page

Gene Page: VANGL1

Summary

GeneID

81839

Symbol

VANGL1

Synonyms

LPP2|MGC5338|STB2|STBM2

Description

vang-like 1 (van gogh, Drosophila)

Locus tag

Gene type

protein-coding

Map location

1p11-p13.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0235

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00814

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

15205336

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007275

multicellular organismal development

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CD82	4F9 \| C33 \| GR15 \| IA4 \| KAI1 \| R2 \| SAR2 \| ST6 \| TSPAN27	CD82 molecule	-	HPRD	15205336
DVL1	DVL \| MGC54245	dishevelled, dsh homolog 1 (Drosophila)	-	HPRD	15456783
DVL2	-	dishevelled, dsh homolog 2 (Drosophila)	-	HPRD	15456783
DVL3	KIAA0208	dishevelled, dsh homolog 3 (Drosophila)	-	HPRD	15456783

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	520	526	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	520	526	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	520	526	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-128	4023	4029	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
				hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-142-5p	149	155	m8	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-17-5p/20/93.mr/106/519.d	147	154	1A,m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-183	1974	1981	1A,m8	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-27	4023	4030	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	4023	4030	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-299-5p	264	271	1A,m8	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-378	1881	1887	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-9	268	274	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.