Gene Page: VAMP3

Summary
GeneID  9341
Symbol  VAMP3
Synonyms  CEB
Description  vesicle-associated membrane protein 3 (cellubrevin)
See related  HGNC:12644|MIM:603657|Ensembl:ENSG00000049245|HPRD:04711|
Locus tag  -
Gene type  protein-coding
Map location  1p36.23
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ADAM230.820.86
BBS70.820.79
INSIG20.820.78
MAP7D20.810.82
MAGEE10.810.85
TBK10.810.80
SACM1L0.810.78
RSRC10.810.74
MFSD60.810.83
DDHD20.810.84
Top 10 negatively co-expressed genes
AF347015.21-0.53-0.46
C16orf74-0.51-0.56
C1orf61-0.50-0.59
IL32-0.50-0.49
CLEC3B-0.49-0.56
IGFBP7-0.48-0.53
ACSF2-0.48-0.51
PLA2G5-0.48-0.44
RAB34-0.47-0.54
GNG11-0.47-0.50
Gene Ontology
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006461protein complex assemblyTAS9885218 
GO:0006944membrane fusionTAS9885218 
GO:0006904vesicle docking during exocytosisTAS9885218 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0019717synaptosomeIEASynap, Brain (GO term level: 7)-
GO:0045202synapseIEAneuron, Synap, Neurotransmitter, Glial (GO term level: 2)-
GO:0016020membraneIEA-
GO:0016021integral to membraneTAS9885218 
GO:0030054cell junctionIEA-
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ACAP1CENTB1 | KIAA0050ArfGAP with coiled-coil, ankyrin repeat and PH domains 1ACAP1 interacts with Cbv.BIND15525538 
BCAP316C6-AG | BAP31 | CDM | DXS1357EB-cell receptor-associated protein 31-HPRD,BioGRID9396746 
RDBPD6S45 | NELF-E | RD | RDPRD RNA binding proteinTwo-hybridBioGRID16169070 
SNAP23HsT17016 | SNAP23A | SNAP23Bsynaptosomal-associated protein, 23kDaAffinity Capture-WesternBioGRID10820264 |12828989 
-HPRD12130530 
SNAP23 interacts with VAMP3.BIND15610015 
STX16MGC90328 | SYN16 | hsyn16syntaxin 16-HPRD,BioGRID11839770 
STX2EPIM | EPM | MGC51014 | STX2A | STX2B | STX2Csyntaxin 2Two-hybridBioGRID12828989 
STX3STX3Asyntaxin 3-HPRD9614185 |9701566 
Two-hybridBioGRID12828989 
STX4STX4A | p35-2syntaxin 4-HPRD,BioGRID12130530 
STX6-syntaxin 6Affinity Capture-WesternBioGRID11839770 
VAMP2FLJ11460 | SYB2 | VAMP-2vesicle-associated membrane protein 2 (synaptobrevin 2)Reconstituted ComplexBioGRID12130530 
VAMP8EDBvesicle-associated membrane protein 8 (endobrevin)Reconstituted ComplexBioGRID12130530 
VTI1AMVti1 | Vti1-rp2vesicle transport through interaction with t-SNAREs homolog 1A (yeast)Affinity Capture-WesternBioGRID11839770 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-124.1438444m8hsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-124/506202208m8hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
hsa-miR-506UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brainUAAGGCACGCGGUGAAUGCC
miR-1403413471Ahsa-miR-140brainAGUGGUUUUACCCUAUGGUAG
miR-142-3p398404m8hsa-miR-142-3pUGUAGUGUUUCCUACUUUAUGGA
miR-1826756821A,m8hsa-miR-182UUUGGCAAUGGUAGAACUCACA
miR-34b4034101A,m8hsa-miR-34bUAGGCAGUGUCAUUAGCUGAUUG
miR-49616771683m8hsa-miR-496AUUACAUGGCCAAUCUC
miR-505153015361Ahsa-miR-505GUCAACACUUGCUGGUUUCCUC
miR-9660666m8hsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
miR-966766821Ahsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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