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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: TRAM2

Summary

GeneID

9697

Symbol

TRAM2

Synonyms

KIAA0057

Description

translocation associated membrane protein 2

Locus tag

Gene type

protein-coding

Map location

6p21.1-p12

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.04433

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

PUM2

0.95

GTF2A1

0.94

0.95

EPM2AIP1

0.94

0.95

THUMPD1

0.94

0.95

POLR3A

0.94

GSK3B

0.93

0.94

HMG20A

0.93

0.94

AP1G1

0.93

0.94

AP1GBP1

0.93

0.95

DYRK1A

0.93

0.94

Top 10 negatively co-expressed genes

AF347015.31

-0.75

-0.83

FXYD1

-0.74

-0.83

MT-CO2

-0.74

-0.83

IFI27

-0.73

-0.83

HIGD1B

-0.73

-0.83

HSD17B14

-0.72

-0.76

CST3

-0.71

-0.82

S100A16

-0.71

-0.79

MT-CYB

-0.70

-0.79

AF347015.33

-0.70

-0.77

Gene Ontology

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0015031

protein transport

IEA

GO:0065002

intracellular protein transmembrane transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CREBBP	CBP \| KAT3A \| RSTS	CREB binding protein	-	HPRD	14612417
GTF2B	TF2B \| TFIIB	general transcription factor IIB	-	HPRD	14612417
GTF2F2	BTF4 \| RAP30 \| TF2F2 \| TFIIF	general transcription factor IIF, polypeptide 2, 30kDa	-	HPRD	14612417
POLR2A	MGC75453 \| POLR2 \| POLRA \| RPB1 \| RPBh1 \| RPO2 \| RPOL2 \| RpIILS \| hRPB220 \| hsRPB1	polymerase (RNA) II (DNA directed) polypeptide A, 220kDa	-	HPRD	14612417
TBP	GTF2D \| GTF2D1 \| MGC117320 \| MGC126054 \| MGC126055 \| SCA17 \| TFIID	TATA box binding protein	-	HPRD	14612417
TRAM2	KIAA0057	translocation associated membrane protein 2	-	HPRD	14749390

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	4317	4323	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	4316	4323	1A,m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	4316	4323	1A,m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-133	5548	5554	1A	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	5548	5554	1A	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-25/32/92/363/367	4937	4944	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-493-5p	5728	5734	m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.