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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SETD1A

Summary

GeneID

9739

Symbol

SETD1A

Synonyms

KIAA0339|KMT2F|Set1|Set1A

Description

SET domain containing 1A

Locus tag

Gene type

protein-coding

Map location

16p11.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01775

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

POM121C

0.97

SSH1

0.93

0.94

UBN1

0.92

0.94

GBF1

0.92

0.94

TBC1D24

0.92

0.94

RPAP1

0.92

0.94

HCFC1

0.92

0.94

PCNXL3

0.92

0.90

ZFYVE20

0.92

SEC16A

0.91

0.92

Top 10 negatively co-expressed genes

AF347015.31

-0.69

-0.73

AF347015.21

-0.68

-0.81

MT-CO2

-0.68

-0.73

HIGD1B

-0.66

-0.73

C1orf54

-0.66

-0.83

FXYD1

-0.65

-0.69

GNG11

-0.64

-0.75

MT-CYB

-0.64

-0.67

AF347015.8

-0.64

-0.70

AF347015.33

-0.64

-0.66

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

IEA

GO:0005515

protein binding

IPI

12670868

GO:0016740

transferase activity

IEA

GO:0008168

methyltransferase activity

IEA

GO:0018024

histone-lysine N-methyltransferase activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

GO:0016568

chromatin modification

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0016607

nuclear speck

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
HCFC1	CFF \| HCF-1 \| HCF1 \| HFC1 \| MGC70925 \| VCAF	host cell factor C1 (VP16-accessory protein)	Affinity Capture-MS	BioGRID	12670868

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-142-5p	626	632	m8	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-485-5p	146	152	1A	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.