Gene Page: PHF16

Summary
GeneID  9767
Symbol  PHF16
Synonyms  JADE3|KIAA0215|MGC138748|MGC138749
Description  PHD finger protein 16
See related  HGNC:22982|MIM:300618|Ensembl:ENSG00000102221|HPRD:06675|
Locus tag  -
Gene type  protein-coding
Map location  Xp11.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
VPS180.830.84
USP350.820.82
MAEA0.810.81
PGS10.810.81
TTC150.810.82
ZDHHC180.810.82
WDTC10.810.81
KIAA04270.800.84
NACAD0.800.81
CTBP10.800.80
Top 10 negatively co-expressed genes
AF347015.31-0.69-0.69
AF347015.21-0.68-0.72
MT-CO2-0.66-0.66
AF347015.8-0.64-0.65
AF347015.2-0.63-0.63
HIGD1B-0.63-0.66
NOSTRIN-0.62-0.64
AF347015.33-0.62-0.62
MT-CYB-0.62-0.62
AF347015.27-0.61-0.63
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIEA-
GO:0008270zinc ion bindingIEA-
GO:0046872metal ion bindingIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIDA18029348 
GO:0005739mitochondrionIDA18029348 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-124.1126812741Ahsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-125/351191619221Ahsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-200bc/429202820341Ahsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
miR-218173179m8hsa-miR-218brainUUGUGCUUGAUCUAACCAUGU
miR-30-5p6796861A,m8hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-3818608661Ahsa-miR-381UAUACAAGGGCAAGCUCUCUGU
miR-452184018461Ahsa-miR-452UGUUUGCAGAGGAAACUGAGAC
miR-495204820541Ahsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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