Gene Page: DDX46

Summary
GeneID  9879
Symbol  DDX46
Synonyms  FLJ25329|KIAA0801|MGC9936|PRPF5
Description  DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
See related  HGNC:18681|Ensembl:ENSG00000145833|HPRD:10862|
Locus tag  -
Gene type  protein-coding
Map location  5q31.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
LEMD20.840.85
FRAT20.830.84
DAPK10.830.82
DTX10.820.84
CBFA2T30.810.82
MEN10.810.85
CNO0.810.83
ZNF7770.800.85
ZNF4970.800.83
C19orf290.800.82
Top 10 negatively co-expressed genes
AF347015.31-0.61-0.74
MT-CO2-0.59-0.73
AF347015.27-0.58-0.70
C5orf53-0.58-0.63
MT-CYB-0.57-0.71
S100B-0.57-0.66
AF347015.33-0.57-0.69
COPZ2-0.56-0.65
AF347015.8-0.56-0.72
AF347015.15-0.55-0.69
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
SF3A2PRP11 | PRPF11 | SAP62 | SF3a66splicing factor 3a, subunit 2, 66kDaAffinity Capture-MS
Affinity Capture-Western		BioGRID12234937 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-2921582164m8hsa-miR-29aSZUAGCACCAUCUGAAAUCGGUU
hsa-miR-29bSZUAGCACCAUUUGAAAUCAGUGUU
hsa-miR-29cSZUAGCACCAUUUGAAAUCGGU
miR-30-5p64701Ahsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.