Search results:
SNP ID | Chr. | Position | A1 | A2 | P | Beta | Func | Gene | Source | eSNP | meSNP | In CNV | In Linkage |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs10170846 | chr2 | 223517705 | G | C | 0.564 | 0.993 | intronic | FARSB, | CV:GWAScat | Y | N | N | N |
eQTL annotation | ||||||||
SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
---|---|---|---|---|---|---|---|---|
rs10170846 | 2 | 223517705 | RP11-16P6.1 | ENSG00000261428.1 | 5.30222E-6 | 1.65331E-2 | -83267 | gtex_brain_putamen_basal |
There is no meQTL for this SNP.
Enhancer annotation
Chromosome | Start | End | Region | TSS distance |
---|---|---|---|---|
chr2 | 223469875 | 223470307 | E068 | 47398 |
chr2 | 223470375 | 223470611 | E068 | 47094 |
chr2 | 223470953 | 223471394 | E068 | 46311 |
chr2 | 223469875 | 223470307 | E069 | 47398 |
chr2 | 223470375 | 223470611 | E069 | 47094 |
chr2 | 223470953 | 223471394 | E069 | 46311 |
chr2 | 223469875 | 223470307 | E071 | 47398 |
chr2 | 223470375 | 223470611 | E071 | 47094 |
chr2 | 223470953 | 223471394 | E071 | 46311 |
chr2 | 223473698 | 223473986 | E071 | 43719 |
chr2 | 223474172 | 223474289 | E071 | 43416 |
chr2 | 223518194 | 223518244 | E072 | 489 |
chr2 | 223469875 | 223470307 | E074 | 47398 |
chr2 | 223470953 | 223471394 | E074 | 46311 |
chr2 | 223471804 | 223471854 | E081 | 45851 |
chr2 | 223472865 | 223473172 | E081 | 44533 |
Promoter annotation
Chromosome | Start | End | Region | TSS distance |
---|---|---|---|---|
chr2 | 223519789 | 223519873 | E067 | 2084 |
chr2 | 223519907 | 223521824 | E067 | 2202 |
chr2 | 223535986 | 223536829 | E067 | 18281 |
chr2 | 223536879 | 223536990 | E067 | 19174 |
chr2 | 223537028 | 223537102 | E067 | 19323 |
chr2 | 223519789 | 223519873 | E068 | 2084 |
chr2 | 223519907 | 223521824 | E068 | 2202 |
chr2 | 223535986 | 223536829 | E068 | 18281 |
chr2 | 223536879 | 223536990 | E068 | 19174 |
chr2 | 223537028 | 223537102 | E068 | 19323 |
chr2 | 223519789 | 223519873 | E069 | 2084 |
chr2 | 223519907 | 223521824 | E069 | 2202 |
chr2 | 223535986 | 223536829 | E069 | 18281 |
chr2 | 223536879 | 223536990 | E069 | 19174 |
chr2 | 223537028 | 223537102 | E069 | 19323 |
chr2 | 223519789 | 223519873 | E070 | 2084 |
chr2 | 223519907 | 223521824 | E070 | 2202 |
chr2 | 223536879 | 223536990 | E070 | 19174 |
chr2 | 223519789 | 223519873 | E071 | 2084 |
chr2 | 223519907 | 223521824 | E071 | 2202 |
chr2 | 223535986 | 223536829 | E071 | 18281 |
chr2 | 223536879 | 223536990 | E071 | 19174 |
chr2 | 223537028 | 223537102 | E071 | 19323 |
chr2 | 223519789 | 223519873 | E072 | 2084 |
chr2 | 223519907 | 223521824 | E072 | 2202 |
chr2 | 223535986 | 223536829 | E072 | 18281 |
chr2 | 223536879 | 223536990 | E072 | 19174 |
chr2 | 223537028 | 223537102 | E072 | 19323 |
chr2 | 223519789 | 223519873 | E073 | 2084 |
chr2 | 223519907 | 223521824 | E073 | 2202 |
chr2 | 223535986 | 223536829 | E073 | 18281 |
chr2 | 223536879 | 223536990 | E073 | 19174 |
chr2 | 223537028 | 223537102 | E073 | 19323 |
chr2 | 223519907 | 223521824 | E074 | 2202 |
chr2 | 223535986 | 223536829 | E074 | 18281 |
chr2 | 223536879 | 223536990 | E074 | 19174 |
chr2 | 223537028 | 223537102 | E074 | 19323 |
chr2 | 223519907 | 223521824 | E081 | 2202 |
chr2 | 223519789 | 223519873 | E082 | 2084 |
chr2 | 223519907 | 223521824 | E082 | 2202 |
chr2 | 223535986 | 223536829 | E082 | 18281 |