Search results:
| SNP ID | Chr. | Position | A1 | A2 | P | Beta | Func | Gene | Source | eSNP | meSNP | In CNV | In Linkage |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs12826178 | chr12 | 57622371 | T | G | 5.297E-12 | 0.846 | upstream | SHMT2, | CV:GWAScat, CV:PGC128, CV:PGCnp | N | N | N | N |
There is no eQTL for this SNP.
There is no meQTL for this SNP.
Enhancer annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr12 | 57601393 | 57601443 | E067 | 20928 |
| chr12 | 57601569 | 57601798 | E067 | 20573 |
| chr12 | 57601813 | 57602016 | E067 | 20355 |
| chr12 | 57602155 | 57602237 | E067 | 20134 |
| chr12 | 57602272 | 57602326 | E067 | 20045 |
| chr12 | 57602331 | 57602420 | E067 | 19951 |
| chr12 | 57602483 | 57602572 | E067 | 19799 |
| chr12 | 57602667 | 57603248 | E067 | 19123 |
| chr12 | 57625799 | 57625863 | E067 | 3428 |
| chr12 | 57626002 | 57626099 | E067 | 3631 |
| chr12 | 57666009 | 57666371 | E067 | 43638 |
| chr12 | 57666499 | 57667011 | E067 | 44128 |
| chr12 | 57586634 | 57586713 | E068 | 35658 |
| chr12 | 57586733 | 57586790 | E068 | 35581 |
| chr12 | 57586929 | 57587009 | E068 | 35362 |
| chr12 | 57587165 | 57587205 | E068 | 35166 |
| chr12 | 57588095 | 57588213 | E068 | 34158 |
| chr12 | 57588399 | 57588503 | E068 | 33868 |
| chr12 | 57588718 | 57588848 | E068 | 33523 |
| chr12 | 57588998 | 57589084 | E068 | 33287 |
| chr12 | 57589174 | 57589325 | E068 | 33046 |
| chr12 | 57589354 | 57589785 | E068 | 32586 |
| chr12 | 57589877 | 57590062 | E068 | 32309 |
| chr12 | 57599770 | 57600246 | E068 | 22125 |
| chr12 | 57600327 | 57600500 | E068 | 21871 |
| chr12 | 57600502 | 57600603 | E068 | 21768 |
| chr12 | 57601393 | 57601443 | E068 | 20928 |
| chr12 | 57601569 | 57601798 | E068 | 20573 |
| chr12 | 57601813 | 57602016 | E068 | 20355 |
| chr12 | 57602155 | 57602237 | E068 | 20134 |
| chr12 | 57602272 | 57602326 | E068 | 20045 |
| chr12 | 57602331 | 57602420 | E068 | 19951 |
| chr12 | 57602483 | 57602572 | E068 | 19799 |
| chr12 | 57602667 | 57603248 | E068 | 19123 |
| chr12 | 57603333 | 57603396 | E068 | 18975 |
| chr12 | 57603476 | 57603519 | E068 | 18852 |
| chr12 | 57603557 | 57603623 | E068 | 18748 |
| chr12 | 57648926 | 57649004 | E068 | 26555 |
| chr12 | 57649021 | 57649071 | E068 | 26650 |
| chr12 | 57649317 | 57649397 | E068 | 26946 |
| chr12 | 57601393 | 57601443 | E069 | 20928 |
| chr12 | 57601569 | 57601798 | E069 | 20573 |
| chr12 | 57601813 | 57602016 | E069 | 20355 |
| chr12 | 57602155 | 57602237 | E069 | 20134 |
| chr12 | 57602272 | 57602326 | E069 | 20045 |
| chr12 | 57602331 | 57602420 | E069 | 19951 |
| chr12 | 57602483 | 57602572 | E069 | 19799 |
| chr12 | 57602667 | 57603248 | E069 | 19123 |
| chr12 | 57603333 | 57603396 | E069 | 18975 |
| chr12 | 57603476 | 57603519 | E069 | 18852 |
| chr12 | 57603557 | 57603623 | E069 | 18748 |
| chr12 | 57624872 | 57624935 | E069 | 2501 |
| chr12 | 57625003 | 57625053 | E069 | 2632 |
| chr12 | 57625132 | 57625208 | E069 | 2761 |
| chr12 | 57657520 | 57657879 | E069 | 35149 |
| chr12 | 57624872 | 57624935 | E070 | 2501 |
| chr12 | 57583819 | 57584402 | E071 | 37969 |
| chr12 | 57601393 | 57601443 | E071 | 20928 |
| chr12 | 57601569 | 57601798 | E071 | 20573 |
| chr12 | 57601813 | 57602016 | E071 | 20355 |
| chr12 | 57602155 | 57602237 | E071 | 20134 |
| chr12 | 57602272 | 57602326 | E071 | 20045 |
| chr12 | 57602331 | 57602420 | E071 | 19951 |
| chr12 | 57602483 | 57602572 | E071 | 19799 |
| chr12 | 57602667 | 57603248 | E071 | 19123 |
| chr12 | 57603333 | 57603396 | E071 | 18975 |
| chr12 | 57603476 | 57603519 | E071 | 18852 |
| chr12 | 57603557 | 57603623 | E071 | 18748 |
| chr12 | 57603643 | 57603734 | E071 | 18637 |
| chr12 | 57603882 | 57604033 | E071 | 18338 |
| chr12 | 57624872 | 57624935 | E071 | 2501 |
| chr12 | 57666499 | 57667011 | E071 | 44128 |
| chr12 | 57667057 | 57667189 | E071 | 44686 |
| chr12 | 57601393 | 57601443 | E072 | 20928 |
| chr12 | 57601569 | 57601798 | E072 | 20573 |
| chr12 | 57601813 | 57602016 | E072 | 20355 |
| chr12 | 57602155 | 57602237 | E072 | 20134 |
| chr12 | 57602272 | 57602326 | E072 | 20045 |
| chr12 | 57602331 | 57602420 | E072 | 19951 |
| chr12 | 57602483 | 57602572 | E072 | 19799 |
| chr12 | 57602667 | 57603248 | E072 | 19123 |
| chr12 | 57624872 | 57624935 | E072 | 2501 |
| chr12 | 57583338 | 57583409 | E073 | 38962 |
| chr12 | 57583495 | 57583647 | E073 | 38724 |
| chr12 | 57583819 | 57584402 | E073 | 37969 |
| chr12 | 57584404 | 57584737 | E073 | 37634 |
| chr12 | 57588718 | 57588848 | E073 | 33523 |
| chr12 | 57588998 | 57589084 | E073 | 33287 |
| chr12 | 57589174 | 57589325 | E073 | 33046 |
| chr12 | 57589354 | 57589785 | E073 | 32586 |
| chr12 | 57589877 | 57590062 | E073 | 32309 |
| chr12 | 57590401 | 57590475 | E073 | 31896 |
| chr12 | 57590517 | 57590625 | E073 | 31746 |
| chr12 | 57590707 | 57590776 | E073 | 31595 |
| chr12 | 57590988 | 57591118 | E073 | 31253 |
| chr12 | 57601813 | 57602016 | E073 | 20355 |
| chr12 | 57602155 | 57602237 | E073 | 20134 |
| chr12 | 57602272 | 57602326 | E073 | 20045 |
| chr12 | 57602331 | 57602420 | E073 | 19951 |
| chr12 | 57602483 | 57602572 | E073 | 19799 |
| chr12 | 57602667 | 57603248 | E073 | 19123 |
| chr12 | 57603333 | 57603396 | E073 | 18975 |
| chr12 | 57603476 | 57603519 | E073 | 18852 |
| chr12 | 57603557 | 57603623 | E073 | 18748 |
| chr12 | 57624872 | 57624935 | E073 | 2501 |
| chr12 | 57625003 | 57625053 | E073 | 2632 |
| chr12 | 57625132 | 57625208 | E073 | 2761 |
| chr12 | 57625237 | 57625291 | E073 | 2866 |
| chr12 | 57625305 | 57625493 | E073 | 2934 |
| chr12 | 57625495 | 57625575 | E073 | 3124 |
| chr12 | 57666009 | 57666371 | E073 | 43638 |
| chr12 | 57666499 | 57667011 | E073 | 44128 |
| chr12 | 57667057 | 57667189 | E073 | 44686 |
| chr12 | 57601393 | 57601443 | E074 | 20928 |
| chr12 | 57601569 | 57601798 | E074 | 20573 |
| chr12 | 57601813 | 57602016 | E074 | 20355 |
| chr12 | 57602155 | 57602237 | E074 | 20134 |
| chr12 | 57602272 | 57602326 | E074 | 20045 |
| chr12 | 57602331 | 57602420 | E074 | 19951 |
| chr12 | 57602483 | 57602572 | E074 | 19799 |
| chr12 | 57602667 | 57603248 | E074 | 19123 |
| chr12 | 57601393 | 57601443 | E081 | 20928 |
| chr12 | 57601569 | 57601798 | E081 | 20573 |
| chr12 | 57601813 | 57602016 | E081 | 20355 |
| chr12 | 57602155 | 57602237 | E081 | 20134 |
| chr12 | 57602272 | 57602326 | E081 | 20045 |
| chr12 | 57602331 | 57602420 | E081 | 19951 |
| chr12 | 57602483 | 57602572 | E081 | 19799 |
| chr12 | 57602667 | 57603248 | E081 | 19123 |
| chr12 | 57624872 | 57624935 | E081 | 2501 |
| chr12 | 57625003 | 57625053 | E081 | 2632 |
| chr12 | 57625132 | 57625208 | E081 | 2761 |
| chr12 | 57655021 | 57655071 | E081 | 32650 |
| chr12 | 57655173 | 57655663 | E081 | 32802 |
| chr12 | 57655671 | 57655784 | E081 | 33300 |
| chr12 | 57656004 | 57656171 | E081 | 33633 |
| chr12 | 57656352 | 57656497 | E081 | 33981 |
| chr12 | 57583819 | 57584402 | E082 | 37969 |
| chr12 | 57601393 | 57601443 | E082 | 20928 |
| chr12 | 57601569 | 57601798 | E082 | 20573 |
| chr12 | 57624872 | 57624935 | E082 | 2501 |
| chr12 | 57654473 | 57654606 | E082 | 32102 |
| chr12 | 57654931 | 57654999 | E082 | 32560 |
| chr12 | 57655021 | 57655071 | E082 | 32650 |
| chr12 | 57655173 | 57655663 | E082 | 32802 |
| chr12 | 57655671 | 57655784 | E082 | 33300 |
| chr12 | 57656004 | 57656171 | E082 | 33633 |
| chr12 | 57656352 | 57656497 | E082 | 33981 |
Promoter annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr12 | 57630508 | 57638606 | E067 | 8137 |
| chr12 | 57630508 | 57638606 | E068 | 8137 |
| chr12 | 57630508 | 57638606 | E072 | 8137 |
| chr12 | 57630508 | 57638606 | E073 | 8137 |
| chr12 | 57630508 | 57638606 | E074 | 8137 |
| chr12 | 57610698 | 57611799 | E082 | 10572 |
| chr12 | 57630508 | 57638606 | E082 | 8137 |