Search results:
| SNP ID | Chr. | Position | A1 | A2 | P | Beta | Func | Gene | Distanceb | Source | eSNP | meSNP | In CNV | In Linkage |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs1339898 | chr6 | 28395506 | T | C | 1.509E-12 | 0.921 | intergenic | ZSCAN12, ZSCAN23, | dist=27962; dist=4926 | CV:GWASdb, CV:PGCnp | Y | N | N | N |
 eQTL annotation | ||||||||
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs1339898 | 6 | 28395506 | AL022393.7 | ENSG00000216901.1 | 1.1174E-8 | 3.00328E-3 | 251540 | gtex_brain_ba24 |
| rs1339898 | 6 | 28395506 | AL022393.7 | ENSG00000216901.1 | 2.96835E-10 | 2.21696E-3 | 251540 | gtex_brain_putamen_basal |
| rs1339898 | 6 | 28395506 | ZSCAN31 | ENSG00000235109.3 | 5.69794E-6 | 2.21696E-3 | -71458 | gtex_brain_putamen_basal |
There is no meQTL for this SNP.
Enhancer annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr6 | 28364980 | 28365062 | E067 | 30444 |
| chr6 | 28364492 | 28364582 | E069 | 30924 |
| chr6 | 28364585 | 28364717 | E069 | 30789 |
| chr6 | 28364980 | 28365062 | E069 | 30444 |
| chr6 | 28361415 | 28361489 | E070 | 34017 |
| chr6 | 28361826 | 28361930 | E070 | 33576 |
| chr6 | 28364492 | 28364582 | E070 | 30924 |
| chr6 | 28361826 | 28361930 | E073 | 33576 |
| chr6 | 28361415 | 28361489 | E081 | 34017 |
| chr6 | 28361826 | 28361930 | E081 | 33576 |
| chr6 | 28364492 | 28364582 | E081 | 30924 |
| chr6 | 28364585 | 28364717 | E081 | 30789 |
| chr6 | 28364980 | 28365062 | E081 | 30444 |
| chr6 | 28361415 | 28361489 | E082 | 34017 |
| chr6 | 28361826 | 28361930 | E082 | 33576 |
| chr6 | 28364492 | 28364582 | E082 | 30924 |
| chr6 | 28364585 | 28364717 | E082 | 30789 |
Promoter annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr6 | 28350823 | 28351766 | E067 | 43740 |
| chr6 | 28366714 | 28368010 | E067 | 27496 |
| chr6 | 28368080 | 28368197 | E067 | 27309 |
| chr6 | 28410498 | 28410700 | E067 | 14992 |
| chr6 | 28410766 | 28411571 | E067 | 15260 |
| chr6 | 28414556 | 28415328 | E067 | 19050 |
| chr6 | 28442104 | 28443017 | E067 | 46598 |
| chr6 | 28350823 | 28351766 | E068 | 43740 |
| chr6 | 28366224 | 28366284 | E068 | 29222 |
| chr6 | 28366714 | 28368010 | E068 | 27496 |
| chr6 | 28368080 | 28368197 | E068 | 27309 |
| chr6 | 28410498 | 28410700 | E068 | 14992 |
| chr6 | 28410766 | 28411571 | E068 | 15260 |
| chr6 | 28414556 | 28415328 | E068 | 19050 |
| chr6 | 28442104 | 28443017 | E068 | 46598 |
| chr6 | 28350823 | 28351766 | E069 | 43740 |
| chr6 | 28366714 | 28368010 | E069 | 27496 |
| chr6 | 28368080 | 28368197 | E069 | 27309 |
| chr6 | 28410498 | 28410700 | E069 | 14992 |
| chr6 | 28410766 | 28411571 | E069 | 15260 |
| chr6 | 28414556 | 28415328 | E069 | 19050 |
| chr6 | 28350823 | 28351766 | E070 | 43740 |
| chr6 | 28366224 | 28366284 | E070 | 29222 |
| chr6 | 28366714 | 28368010 | E070 | 27496 |
| chr6 | 28368080 | 28368197 | E070 | 27309 |
| chr6 | 28410498 | 28410700 | E070 | 14992 |
| chr6 | 28410766 | 28411571 | E070 | 15260 |
| chr6 | 28414556 | 28415328 | E070 | 19050 |
| chr6 | 28350823 | 28351766 | E071 | 43740 |
| chr6 | 28366224 | 28366284 | E071 | 29222 |
| chr6 | 28366714 | 28368010 | E071 | 27496 |
| chr6 | 28368080 | 28368197 | E071 | 27309 |
| chr6 | 28410498 | 28410700 | E071 | 14992 |
| chr6 | 28410766 | 28411571 | E071 | 15260 |
| chr6 | 28411853 | 28411903 | E071 | 16347 |
| chr6 | 28414556 | 28415328 | E071 | 19050 |
| chr6 | 28350823 | 28351766 | E072 | 43740 |
| chr6 | 28366224 | 28366284 | E072 | 29222 |
| chr6 | 28366714 | 28368010 | E072 | 27496 |
| chr6 | 28368080 | 28368197 | E072 | 27309 |
| chr6 | 28410498 | 28410700 | E072 | 14992 |
| chr6 | 28410766 | 28411571 | E072 | 15260 |
| chr6 | 28414556 | 28415328 | E072 | 19050 |
| chr6 | 28442104 | 28443017 | E072 | 46598 |
| chr6 | 28350823 | 28351766 | E073 | 43740 |
| chr6 | 28366714 | 28368010 | E073 | 27496 |
| chr6 | 28368080 | 28368197 | E073 | 27309 |
| chr6 | 28410498 | 28410700 | E073 | 14992 |
| chr6 | 28410766 | 28411571 | E073 | 15260 |
| chr6 | 28411853 | 28411903 | E073 | 16347 |
| chr6 | 28414556 | 28415328 | E073 | 19050 |
| chr6 | 28442104 | 28443017 | E073 | 46598 |
| chr6 | 28350823 | 28351766 | E074 | 43740 |
| chr6 | 28366714 | 28368010 | E074 | 27496 |
| chr6 | 28368080 | 28368197 | E074 | 27309 |
| chr6 | 28410498 | 28410700 | E074 | 14992 |
| chr6 | 28410766 | 28411571 | E074 | 15260 |
| chr6 | 28366714 | 28368010 | E081 | 27496 |
| chr6 | 28368080 | 28368197 | E081 | 27309 |
| chr6 | 28410498 | 28410700 | E081 | 14992 |
| chr6 | 28410766 | 28411571 | E081 | 15260 |
| chr6 | 28414556 | 28415328 | E081 | 19050 |
| chr6 | 28350823 | 28351766 | E082 | 43740 |
| chr6 | 28366224 | 28366284 | E082 | 29222 |
| chr6 | 28366714 | 28368010 | E082 | 27496 |
| chr6 | 28368080 | 28368197 | E082 | 27309 |
| chr6 | 28410498 | 28410700 | E082 | 14992 |
| chr6 | 28410766 | 28411571 | E082 | 15260 |
| chr6 | 28414556 | 28415328 | E082 | 19050 |