Footnote |
aGene annotation based on ANNOVAR |
Gene | Residing gene or upstream/downstream genes |
Func | Region in genes |
bInformation in PGC report |
p-value | Raw p-value reported in PGC |
BETA | BETA |
cRegulomeDB |
RDB Score | Supporting data |
1a | eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak |
1b | eQTL + TF binding + any motif + DNase Footprint + DNase peak |
1c | eQTL + TF binding + matched TF motif + DNase peak |
1d | eQTL + TF binding + any motif + DNase peak |
1e | eQTL + TF binding + matched TF motif |
1f | eQTL + TF binding / DNase peak |
2a | TF binding + matched TF motif + matched DNase Footprint + DNase peak |
2b | TF binding + any motif + DNase Footprint + DNase peak |
2c | TF binding + matched TF motif + DNase peak |
3a | TF binding + any motif + DNase peak |
3b | TF binding + matched TF motif |
4 | TF binding + DNase peak |
5 | TF binding or DNase peak |
6 | other |
dSNP association with SZ |
PGC128 | Reported among the 128 regions |
GWAS_Cat | Collected in GWAS Catalog as associated with SZ or SZ-related phenotype |
PheGWAS | Collected in PheGWAS as associated with SZ or SZ-related phenotype |
GWASdb | Collected in GWASdb as associated with SZ or SZ-related phenotype |
brain_eQTL | Reported as eSNP in brain eQTL studies from Myers' work or GTEx |