Home Datasets Search Analysis & Tools Documents About SZGR    Quick search: (e.g. 207 or AKT) Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Gene Ranking Integration Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking Release Site Map Support Contact us

Search results:

SNP ID	Chromosome	Position	A1	A2	Pb	Betab	Sourced	eSNPd	In CNV
rs17594526	chr18	53058238	T	C	0.00000003319	1.18	CV:GWAScat|CV:GWASdb|CV:PGCnp	Y	null

SNP to gene mapping
SNP ID	rs17594526
Function	intronic
Gene	TCF4
Distance

eQTL annotation
SNP ID	Chromosome	Position	eGene	Gene Entrez ID	pvalue	qvalue	TSS distance	eQTL type
rs17594526	chr18	53058237	ARC	23237		4.21763E-2		trans
rs17594526	chr18	53058237	NPAS4	266743		5.41653E-3		trans
rs17594526	chr18	53058237	INHBA	3624		3.37386E-2		trans

There is no enhancer around this SNP.

There is no promoter around this SNP.

Footnote aGene annotation based on ANNOVAR Gene Residing gene or upstream/downstream genes Func Region in genes bInformation in PGC report p-value Raw p-value reported in PGC BETA BETA cRegulomeDB RDB Score Supporting data 1a eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak 1b eQTL + TF binding + any motif + DNase Footprint + DNase peak 1c eQTL + TF binding + matched TF motif + DNase peak 1d eQTL + TF binding + any motif + DNase peak 1e eQTL + TF binding + matched TF motif 1f eQTL + TF binding / DNase peak 2a TF binding + matched TF motif + matched DNase Footprint + DNase peak 2b TF binding + any motif + DNase Footprint + DNase peak 2c TF binding + matched TF motif + DNase peak 3a TF binding + any motif + DNase peak 3b TF binding + matched TF motif 4 TF binding + DNase peak 5 TF binding or DNase peak 6 other dSNP association with SZ PGC128 Reported among the 128 regions GWAS_Cat Collected in GWAS Catalog as associated with SZ or SZ-related phenotype PheGWAS Collected in PheGWAS as associated with SZ or SZ-related phenotype GWASdb Collected in GWASdb as associated with SZ or SZ-related phenotype brain_eQTL Reported as eSNP in brain eQTL studies from Myers' work or GTEx

Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.