Search results:
SNP ID | Chr. | Position | A1 | A2 | P | Beta | Func | Gene | Distanceb | Source | eSNP | meSNP | In CNV | In Linkage |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs2126709 | chr11 | 123595927 | T | C | 8.048E-4 | 1.12 | UTR3 | ZNF202, | NM_003455:c.*778A>G,NM_001301780:c.*778A>G,NM_001301779:c.*778A>G,NM_001301819:c.*778A>G | CV:GWAScat, CV:PGCnp | Y | N | N | N |
eQTL annotation | ||||||||
SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
---|---|---|---|---|---|---|---|---|
rs2126709 | chr11 | 123595926 | C1orf194 | 127003 | 6.37903E-2 | trans |
There is no meQTL for this SNP.
Enhancer annotation
Chromosome | Start | End | Region | TSS distance |
---|---|---|---|---|
chr11 | 123553645 | 123554077 | E067 | 41850 |
chr11 | 123554298 | 123554588 | E067 | 41339 |
chr11 | 123553645 | 123554077 | E068 | 41850 |
chr11 | 123553645 | 123554077 | E069 | 41850 |
chr11 | 123554298 | 123554588 | E069 | 41339 |
chr11 | 123553645 | 123554077 | E072 | 41850 |
chr11 | 123614018 | 123614144 | E072 | 18091 |
chr11 | 123614339 | 123614401 | E072 | 18412 |
chr11 | 123614694 | 123614774 | E072 | 18767 |
chr11 | 123553645 | 123554077 | E081 | 41850 |
chr11 | 123554298 | 123554588 | E081 | 41339 |
chr11 | 123554592 | 123554936 | E081 | 40991 |
chr11 | 123555058 | 123555138 | E081 | 40789 |
chr11 | 123555402 | 123555452 | E081 | 40475 |
chr11 | 123569340 | 123569647 | E081 | 26280 |
chr11 | 123553645 | 123554077 | E082 | 41850 |
chr11 | 123554298 | 123554588 | E082 | 41339 |
chr11 | 123554592 | 123554936 | E082 | 40991 |
Promoter annotation
Chromosome | Start | End | Region | TSS distance |
---|---|---|---|---|
chr11 | 123611535 | 123613830 | E067 | 15608 |
chr11 | 123611535 | 123613830 | E068 | 15608 |
chr11 | 123611535 | 123613830 | E069 | 15608 |
chr11 | 123611535 | 123613830 | E070 | 15608 |
chr11 | 123611535 | 123613830 | E071 | 15608 |
chr11 | 123611535 | 123613830 | E072 | 15608 |
chr11 | 123611535 | 123613830 | E073 | 15608 |
chr11 | 123611535 | 123613830 | E074 | 15608 |
chr11 | 123611535 | 123613830 | E081 | 15608 |
chr11 | 123611535 | 123613830 | E082 | 15608 |