Search results:
| SNP ID | Chr. | Position | A1 | A2 | P | Beta | Func | Gene | Distanceb | Source | eSNP | meSNP | In CNV | In Linkage |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs2524005 | chr6 | 29899677 | A | G | 8.104E-13 | 0.898 | intergenic | HCG4B, HLA-A, | dist=4685; dist=10570 | CV:GWAScat, CV:GWASdb, CV:PGCnp | N | Y | N | N |
There is no eQTL for this SNP.
| meQTL annotation | ||||||||
| SNP ID | Chromosome | Position | CpG | Nearest Gene | pvalue | beta | ||
|---|---|---|---|---|---|---|---|---|
| rs2524005 | chr6 | 29899677 | cg20142377 | HLA-G | 1.75E-10 | 3.48078E-2 | ||
Enhancer annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr6 | 29936015 | 29936238 | E067 | 36338 |
| chr6 | 29945416 | 29945516 | E067 | 45739 |
| chr6 | 29893240 | 29893437 | E068 | 6240 |
| chr6 | 29895737 | 29895791 | E068 | 3886 |
| chr6 | 29908858 | 29909088 | E068 | 9181 |
| chr6 | 29912125 | 29912286 | E068 | 12448 |
| chr6 | 29912344 | 29912470 | E068 | 12667 |
| chr6 | 29912562 | 29912808 | E068 | 12885 |
| chr6 | 29908858 | 29909088 | E069 | 9181 |
| chr6 | 29936015 | 29936238 | E069 | 36338 |
| chr6 | 29945416 | 29945516 | E070 | 45739 |
| chr6 | 29908858 | 29909088 | E071 | 9181 |
| chr6 | 29935205 | 29935785 | E071 | 35528 |
| chr6 | 29935825 | 29935911 | E071 | 36148 |
| chr6 | 29945416 | 29945516 | E071 | 45739 |
| chr6 | 29895737 | 29895791 | E072 | 3886 |
| chr6 | 29908858 | 29909088 | E072 | 9181 |
| chr6 | 29854135 | 29854235 | E073 | 45442 |
| chr6 | 29854304 | 29854382 | E073 | 45295 |
| chr6 | 29908858 | 29909088 | E073 | 9181 |
| chr6 | 29908858 | 29909088 | E074 | 9181 |
| chr6 | 29895737 | 29895791 | E081 | 3886 |
Promoter annotation
| Chromosome | Start | End | Region | TSS distance |
|---|---|---|---|---|
| chr6 | 29855035 | 29856473 | E067 | 43204 |
| chr6 | 29856496 | 29856581 | E067 | 43096 |
| chr6 | 29893706 | 29895456 | E067 | 4221 |
| chr6 | 29909217 | 29910813 | E067 | 9540 |
| chr6 | 29910841 | 29911227 | E067 | 11164 |
| chr6 | 29911317 | 29911426 | E067 | 11640 |
| chr6 | 29944105 | 29944614 | E067 | 44428 |
| chr6 | 29944623 | 29944679 | E067 | 44946 |
| chr6 | 29944712 | 29945244 | E067 | 45035 |
| chr6 | 29855035 | 29856473 | E068 | 43204 |
| chr6 | 29856496 | 29856581 | E068 | 43096 |
| chr6 | 29893706 | 29895456 | E068 | 4221 |
| chr6 | 29909217 | 29910813 | E068 | 9540 |
| chr6 | 29910841 | 29911227 | E068 | 11164 |
| chr6 | 29911317 | 29911426 | E068 | 11640 |
| chr6 | 29942725 | 29943397 | E068 | 43048 |
| chr6 | 29943514 | 29943667 | E068 | 43837 |
| chr6 | 29944105 | 29944614 | E068 | 44428 |
| chr6 | 29944623 | 29944679 | E068 | 44946 |
| chr6 | 29944712 | 29945244 | E068 | 45035 |
| chr6 | 29855035 | 29856473 | E069 | 43204 |
| chr6 | 29856496 | 29856581 | E069 | 43096 |
| chr6 | 29893706 | 29895456 | E069 | 4221 |
| chr6 | 29909217 | 29910813 | E069 | 9540 |
| chr6 | 29910841 | 29911227 | E069 | 11164 |
| chr6 | 29911317 | 29911426 | E069 | 11640 |
| chr6 | 29942725 | 29943397 | E069 | 43048 |
| chr6 | 29944105 | 29944614 | E069 | 44428 |
| chr6 | 29944623 | 29944679 | E069 | 44946 |
| chr6 | 29944712 | 29945244 | E069 | 45035 |
| chr6 | 29909217 | 29910813 | E070 | 9540 |
| chr6 | 29910841 | 29911227 | E070 | 11164 |
| chr6 | 29911317 | 29911426 | E070 | 11640 |
| chr6 | 29943514 | 29943667 | E070 | 43837 |
| chr6 | 29944105 | 29944614 | E070 | 44428 |
| chr6 | 29944623 | 29944679 | E070 | 44946 |
| chr6 | 29944712 | 29945244 | E070 | 45035 |
| chr6 | 29855035 | 29856473 | E071 | 43204 |
| chr6 | 29856496 | 29856581 | E071 | 43096 |
| chr6 | 29893706 | 29895456 | E071 | 4221 |
| chr6 | 29909217 | 29910813 | E071 | 9540 |
| chr6 | 29910841 | 29911227 | E071 | 11164 |
| chr6 | 29911317 | 29911426 | E071 | 11640 |
| chr6 | 29911480 | 29911862 | E071 | 11803 |
| chr6 | 29942725 | 29943397 | E071 | 43048 |
| chr6 | 29944105 | 29944614 | E071 | 44428 |
| chr6 | 29944623 | 29944679 | E071 | 44946 |
| chr6 | 29944712 | 29945244 | E071 | 45035 |
| chr6 | 29855035 | 29856473 | E072 | 43204 |
| chr6 | 29856496 | 29856581 | E072 | 43096 |
| chr6 | 29893706 | 29895456 | E072 | 4221 |
| chr6 | 29909217 | 29910813 | E072 | 9540 |
| chr6 | 29910841 | 29911227 | E072 | 11164 |
| chr6 | 29911317 | 29911426 | E072 | 11640 |
| chr6 | 29944105 | 29944614 | E072 | 44428 |
| chr6 | 29944623 | 29944679 | E072 | 44946 |
| chr6 | 29944712 | 29945244 | E072 | 45035 |
| chr6 | 29855035 | 29856473 | E073 | 43204 |
| chr6 | 29856496 | 29856581 | E073 | 43096 |
| chr6 | 29893706 | 29895456 | E073 | 4221 |
| chr6 | 29909217 | 29910813 | E073 | 9540 |
| chr6 | 29910841 | 29911227 | E073 | 11164 |
| chr6 | 29911317 | 29911426 | E073 | 11640 |
| chr6 | 29911480 | 29911862 | E073 | 11803 |
| chr6 | 29942725 | 29943397 | E073 | 43048 |
| chr6 | 29943514 | 29943667 | E073 | 43837 |
| chr6 | 29944105 | 29944614 | E073 | 44428 |
| chr6 | 29944623 | 29944679 | E073 | 44946 |
| chr6 | 29944712 | 29945244 | E073 | 45035 |
| chr6 | 29855035 | 29856473 | E074 | 43204 |
| chr6 | 29856496 | 29856581 | E074 | 43096 |
| chr6 | 29893706 | 29895456 | E074 | 4221 |
| chr6 | 29909217 | 29910813 | E074 | 9540 |
| chr6 | 29910841 | 29911227 | E074 | 11164 |
| chr6 | 29911317 | 29911426 | E074 | 11640 |
| chr6 | 29911480 | 29911862 | E074 | 11803 |
| chr6 | 29943514 | 29943667 | E074 | 43837 |
| chr6 | 29944105 | 29944614 | E074 | 44428 |
| chr6 | 29944623 | 29944679 | E074 | 44946 |
| chr6 | 29944712 | 29945244 | E074 | 45035 |
| chr6 | 29855035 | 29856473 | E082 | 43204 |
| chr6 | 29856496 | 29856581 | E082 | 43096 |
| chr6 | 29893706 | 29895456 | E082 | 4221 |
| chr6 | 29909217 | 29910813 | E082 | 9540 |
| chr6 | 29910841 | 29911227 | E082 | 11164 |
| chr6 | 29911317 | 29911426 | E082 | 11640 |
| chr6 | 29944623 | 29944679 | E082 | 44946 |