Gene Page: SEMA4F

Summary
GeneID  10505
Symbol  SEMA4F
Synonyms  M-SEMA|PRO2353|SEMAM|SEMAW|m-Sema-M
Description  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F
See related  HGNC:10734|MIM:603706|Ensembl:ENSG00000135622|HPRD:04748|
Locus tag  -
Gene type  protein-coding
Map location  2p13.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 2 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
RIC8A0.880.88
COPS7B0.880.86
SMYD50.880.87
TRIM270.870.88
RNF100.860.85
C20orf110.860.88
TRPC4AP0.860.85
WDR50.860.86
ZDHHC30.860.84
SEPT30.860.88
Top 10 negatively co-expressed genes
AF347015.8-0.79-0.80
MT-CO2-0.79-0.79
AF347015.21-0.78-0.82
AF347015.27-0.78-0.79
AF347015.33-0.76-0.77
AF347015.31-0.76-0.78
MT-CYB-0.76-0.77
AF347015.15-0.74-0.77
AF347015.2-0.73-0.76
AF347015.26-0.71-0.74
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0004872receptor activityIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007411axon guidanceTASaxon (GO term level: 13)10051670 
GO:0007399nervous system developmentTASneurite (GO term level: 5)10051670 
GO:0007267cell-cell signalingTAS10051670 
GO:0007275multicellular organismal developmentIEA-
GO:0030154cell differentiationIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005624membrane fractionTAS10051670 
GO:0005783endoplasmic reticulumIDA11256614 
GO:0005886plasma membraneTAS10051670 
GO:0005887integral to plasma membraneTAS10051670 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
DLG4FLJ97752 | FLJ98574 | PSD95 | SAP90discs, large homolog 4 (Drosophila)-HPRD,BioGRID11483650 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-124.1116011661Ahsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-153108310891Ahsa-miR-153UUGCAUAGUCACAAAAGUGA
miR-27164316491Ahsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
miR-338138513911Ahsa-miR-338brainUCCAGCAUCAGUGAUUUUGUUGA
miR-34/4498508571A,m8hsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-409-3p928934m8hsa-miR-409-3pCGAAUGUUGCUCGGUGAACCCCU
miR-448108310891Ahsa-miR-448UUGCAUAUGUAGGAUGUCCCAU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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