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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SGCZ

Summary

GeneID

137868

Symbol

SGCZ

Synonyms

MGC149397|ZSG1

Description

sarcoglycan zeta

Locus tag

Gene type

protein-coding

Map location

8p22

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.031

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007010

cytoskeleton organization

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005856

cytoskeleton

IEA

GO:0005737

cytoplasm

IEA

GO:0016021

integral to membrane

IEA

GO:0005886

plasma membrane

IEA

GO:0016012

sarcoglycan complex

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DMD	BMD \| CMD3B \| DXS142 \| DXS164 \| DXS206 \| DXS230 \| DXS239 \| DXS268 \| DXS269 \| DXS270 \| DXS272	dystrophin	-	HPRD	12189167
SGCB	A3b \| LGMD2E \| SGC	sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)	-	HPRD	12189167

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	268	274	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	268	274	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-155	485	491	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-204/211	250	256	m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
miR-204/211	250	256	m8	hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-218	289	295	m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-218	289	295	m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-539	9	15	m8	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.