Gene Page

Gene Page: SYT9

Summary

GeneID

143425

Symbol

SYT9

Synonyms

FLJ45896

Description

synaptotagmin IX

Locus tag

Gene type

protein-coding

Map location

11p15.4

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005509

calcium ion binding

IEA

GO:0005515

protein binding

IEA

GO:0005215

transporter activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006810

transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008021

synaptic vesicle

IEA

Synap, Neurotransmitter (GO term level: 12)

GO:0045202

synapse

IEA

neuron, Synap, Neurotransmitter, Glial (GO term level: 2)

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

GO:0030054

cell junction

IEA

GO:0031410

cytoplasmic vesicle

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CSNK1A1	CK1 \| HLCDGP1 \| PRO2975	casein kinase 1, alpha 1	-	HPRD,BioGRID	12062430
NRXN1	DKFZp313P2036 \| FLJ35941 \| Hs.22998 \| KIAA0578	neurexin 1	-	HPRD	8901523
SNAP25	FLJ23079 \| RIC-4 \| RIC4 \| SEC9 \| SNAP \| SNAP-25 \| bA416N4.2 \| dJ1068F16.2	synaptosomal-associated protein, 25kDa	-	HPRD	12062043
SYNCRIP	GRY-RBP \| HNRPQ1 \| NSAP1 \| RP1-3J17.2 \| dJ3J17.2 \| hnRNP-Q \| pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	-	HPRD,BioGRID	10734137
TRPV1	DKFZp434K0220 \| VR1	transient receptor potential cation channel, subfamily V, member 1	-	HPRD,BioGRID	15066994
TUBB	M40 \| MGC117247 \| MGC16435 \| OK/SW-cl.56 \| TUBB1 \| TUBB5	tubulin, beta	Affinity Capture-Western Reconstituted Complex	BioGRID	12966166
TUBB2A	TUBB \| TUBB2 \| dJ40E16.7	tubulin, beta 2A	-	HPRD	12966166

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-196	465	471	m8	hsa-miR-196a	UAGGUAGUUUCAUGUUGUUGG
miR-196	465	471	m8	hsa-miR-196b	UAGGUAGUUUCCUGUUGUUGG
miR-29	429	435	1A	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-544	1782	1788	1A	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU
miR-9	1213	1219	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.