Gene Page

Gene Page: CNTN4

Summary

GeneID

152330

Symbol

CNTN4

Synonyms

AXCAM|BIG-2|CNTN4A|MGC33615

Description

contactin 4

Locus tag

Gene type

protein-coding

Map location

3p26-p25

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 9

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007420

brain development

ISS

Brain (GO term level: 7)

GO:0007413

axonal fasciculation

TAS

neuron, axon (GO term level: 13)

15106122

GO:0007411

axon guidance

TAS

axon (GO term level: 13)

15106122

GO:0031175

neurite development

ISS

neuron, axon, neurite, dendrite (GO term level: 10)

GO:0048167

regulation of synaptic plasticity

TAS

Synap (GO term level: 8)

15106122

GO:0007158

neuron adhesion

TAS

neuron (GO term level: 5)

14571131

GO:0045665

negative regulation of neuron differentiation

IMP

neuron (GO term level: 10)

14571131

GO:0007399

nervous system development

IMP

neurite (GO term level: 5)

15106122

GO:0007155

cell adhesion

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0030424

axon

NAS

neuron, axon, Neurotransmitter (GO term level: 6)

14571131

GO:0005576

extracellular region

IEA

GO:0005886

plasma membrane

NAS

15106122

GO:0031225

anchored to membrane

IEA

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-129-5p	1590	1597	1A,m8	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	1590	1597	1A,m8	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-142-5p	1168	1174	1A	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-145	107	113	1A	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-148/152	208	215	1A,m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-155	785	791	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
miR-181	913	920	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-200bc/429	1516	1522	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-25/32/92/363/367	703	710	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-30-5p	246	252	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-33	205	211	m8	hsa-miR-33	GUGCAUUGUAGUUGCAUUG
miR-33	205	211	m8	hsa-miR-33b	GUGCAUUGCUGUUGCAUUGCA
miR-362	463	469	m8	hsa-miR-362	AAUCCUUGGAACCUAGGUGUGAGU
miR-365	142	148	1A	hsa-miR-365	UAAUGCCCCUAAAAAUCCUUAU
miR-369-3p	276	282	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	276	282	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-376c	1560	1566	m8	hsa-miR-376c	AACAUAGAGGAAAUUCCACG
miR-410	278	284	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-448	262	268	m8	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-9	237	243	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.