Gene Page: DCX

Summary
GeneID  1641
Symbol  DCX
Synonyms  DBCN|DC|LISX|SCLH|XLIS
Description  doublecortin
See related  HGNC:2714|MIM:300121|Ensembl:ENSG00000077279|HPRD:02127|
Locus tag  RP5-914P14.1
Gene type  protein-coding
Map location  Xq22.3|Xq22.3-q23
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 5 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
CUL20.900.88
HBS1L0.900.89
PSMD10.890.86
RTCD10.890.86
MED60.890.85
SRP540.890.89
NRD10.890.85
VPS350.890.86
ADSS0.890.86
IMMT0.880.85
Top 10 negatively co-expressed genes
MT-CO2-0.76-0.63
AF347015.2-0.75-0.62
AF347015.8-0.75-0.63
MT-CYB-0.73-0.62
AF347015.33-0.73-0.62
AF347015.21-0.73-0.59
AF347015.15-0.72-0.63
AF347015.31-0.72-0.64
AF347015.26-0.72-0.60
AF347015.27-0.69-0.61
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIEA-
GO:0008017microtubule bindingTAS11001923 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007420brain developmentIEABrain (GO term level: 7)-
GO:0001764neuron migrationIEAneuron (GO term level: 8)-
GO:0048675axon extensionIEAaxon (GO term level: 13)-
GO:0021952central nervous system projection neuron axonogenesisIEAneuron, axon (GO term level: 14)-
GO:0048813dendrite morphogenesisIEAneurite, dendrite (GO term level: 12)-
GO:0007242intracellular signaling cascadeIEA-
GO:0007275multicellular organismal developmentIEA-
GO:0030154cell differentiationIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005856cytoskeletonTAS11001923 
GO:0005875microtubule associated complexTAS11001923 
GO:0005737cytoplasmIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
AP1M1AP47 | CLAPM2 | CLTNM | MU-1Aadaptor-related protein complex 1, mu 1 subunit-HPRD11591131 
AP2M1AP50 | CLAPM1 | mu2adaptor-related protein complex 2, mu 1 subunit-HPRD11591131 
DCXDBCN | DC | LISX | SCLH | XLISdoublecortin-HPRD,BioGRID11001923 
NFASCDKFZp686P2250 | FLJ46866 | KIAA0756 | NF | NRCAMLneurofascin homolog (chicken)-HPRD,BioGRID12223548 
PAFAH1B1LIS1 | LIS2 | MDCR | MDS | PAFAHplatelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa-HPRD,BioGRID11001923 
PPP1R9BFLJ30345 | PPP1R6 | PPP1R9 | SPINO | Spnprotein phosphatase 1, regulatory (inhibitor) subunit 9B-HPRD14550532 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
PID_LIS1_PATHWAY 2822All SZGR genes in this pathway
REACTOME_DEVELOPMENTAL_BIOLOGY 396292All SZGR genes in this pathway
REACTOME_AXON_GUIDANCE 251188All SZGR genes in this pathway
REACTOME_L1CAM_INTERACTIONS 8662All SZGR genes in this pathway
DAVICIONI_PAX_FOXO1_SIGNATURE_IN_ARMS_UP 5938All SZGR genes in this pathway
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP 332228All SZGR genes in this pathway
DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP 255177All SZGR genes in this pathway
DAVICIONI_RHABDOMYOSARCOMA_PAX_FOXO1_FUSION_UP 6437All SZGR genes in this pathway
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_DN 17582All SZGR genes in this pathway
LEE_NEURAL_CREST_STEM_CELL_UP 14699All SZGR genes in this pathway
EBAUER_TARGETS_OF_PAX3_FOXO1_FUSION_UP 207128All SZGR genes in this pathway
MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN 164111All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
BENPORATH_ES_WITH_H3K27ME3 1118744All SZGR genes in this pathway
RORIE_TARGETS_OF_EWSR1_FLI1_FUSION_DN 3023All SZGR genes in this pathway
REN_ALVEOLAR_RHABDOMYOSARCOMA_UP 9864All SZGR genes in this pathway
TESAR_ALK_TARGETS_EPISC_3D_UP 77All SZGR genes in this pathway
TESAR_ALK_TARGETS_EPISC_4D_UP 76All SZGR genes in this pathway
TESAR_ALK_AND_JAK_TARGETS_MOUSE_ES_D4_UP 55All SZGR genes in this pathway
JEPSEN_SMRT_TARGETS 3323All SZGR genes in this pathway
HANN_RESISTANCE_TO_BCL2_INHIBITOR_UP 3624All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_UP 648398All SZGR genes in this pathway
BOQUEST_STEM_CELL_UP 260174All SZGR genes in this pathway
BOQUEST_STEM_CELL_CULTURED_VS_FRESH_UP 425298All SZGR genes in this pathway
VERHAAK_GLIOBLASTOMA_PRONEURAL 177132All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
let-7/9827562762m8hsa-let-7abrainUGAGGUAGUAGGUUGUAUAGUU
hsa-let-7bbrainUGAGGUAGUAGGUUGUGUGGUU
hsa-let-7cbrainUGAGGUAGUAGGUUGUAUGGUU
hsa-let-7dbrainAGAGGUAGUAGGUUGCAUAGU
hsa-let-7ebrainUGAGGUAGGAGGUUGUAUAGU
hsa-let-7fbrainUGAGGUAGUAGAUUGUAUAGUU
hsa-miR-98brainUGAGGUAGUAAGUUGUAUUGUU
hsa-let-7gSZUGAGGUAGUAGUUUGUACAGU
hsa-let-7ibrainUGAGGUAGUAGUUUGUGCUGU
miR-128774477501Ahsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
hsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
miR-129-5p105410601Ahsa-miR-129brainCUUUUUGCGGUCUGGGCUUGC
hsa-miR-129-5pCUUUUUGCGGUCUGGGCUUGCU
miR-151770777131Ahsa-miR-151brainACUAGACUGAAGCUCCUUGAGG
miR-182110811141Ahsa-miR-182UUUGGCAAUGGUAGAACUCACA
miR-18367106716m8hsa-miR-183UAUGGCACUGGUAGAAUUCACUG
miR-200bc/429295429601Ahsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
miR-203.169176923m8hsa-miR-203UGAAAUGUUUAGGACCACUAG
miR-25/32/92/363/367606860741Ahsa-miR-25brainCAUUGCACUUGUCUCGGUCUGA
hsa-miR-32UAUUGCACAUUACUAAGUUGC
hsa-miR-92UAUUGCACUUGUCCCGGCCUG
hsa-miR-367AAUUGCACUUUAGCAAUGGUGA
hsa-miR-92bSZUAUUGCACUCGUCCCGGCCUC
miR-27882888m8hsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
hsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
miR-298995m8hsa-miR-29aSZUAGCACCAUCUGAAAUCGGUU
hsa-miR-29bSZUAGCACCAUUUGAAAUCAGUGUU
hsa-miR-29cSZUAGCACCAUUUGAAAUCGGU
miR-30-5p3543611A,m8hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-329786778731Ahsa-miR-329brainAACACACCUGGUUAACCUCUUU
miR-33029312937m8hsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
miR-34/449110511121A,m8hsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-3428848901Ahsa-miR-342brainUCUCACACAGAAAUCGCACCCGUC
miR-362291029161Ahsa-miR-362AAUCCUUGGAACCUAGGUGUGAGU
miR-504320732141A,m8hsa-miR-504AGACCCUGGUCUGCACUCUAU
miR-543125112571Ahsa-miR-543AAACAUUCGCGGUGCACUUCU
miR-9778577911Ahsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
miR-96110811141Ahsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.