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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: RBM24

Summary

GeneID

221662

Symbol

RBM24

Synonyms

FLJ26355|FLJ30829|FLJ37697|RNPC6|dJ259A10.1

Description

RNA binding motif protein 24

Locus tag

Gene type

protein-coding

Map location

6p22.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.033

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

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General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016068

type I hypersensitivity

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN	349	157	All SZGR genes in this pathway
CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_DN	50	36	All SZGR genes in this pathway
SABATES_COLORECTAL_ADENOMA_DN	291	176	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_UP	1821	933	All SZGR genes in this pathway
BENPORATH_EED_TARGETS	1062	725	All SZGR genes in this pathway
NIKOLSKY_BREAST_CANCER_6P24_P22_AMPLICON	21	17	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_4	307	185	All SZGR genes in this pathway
MASSARWEH_TAMOXIFEN_RESISTANCE_DN	258	160	All SZGR genes in this pathway
RIGGI_EWING_SARCOMA_PROGENITOR_UP	430	288	All SZGR genes in this pathway
BRUECKNER_TARGETS_OF_MIRLET7A3_UP	111	69	All SZGR genes in this pathway
YOSHIMURA_MAPK8_TARGETS_UP	1305	895	All SZGR genes in this pathway
KORKOLA_EMBRYONIC_CARCINOMA_VS_SEMINOMA_DN	25	14	All SZGR genes in this pathway
CHANDRAN_METASTASIS_DN	306	191	All SZGR genes in this pathway
HOELZEL_NF1_TARGETS_UP	139	93	All SZGR genes in this pathway
LEE_BMP2_TARGETS_UP	745	475	All SZGR genes in this pathway
PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_6	29	20	All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY	1839	928	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-103/107	1127	1134	1A,m8	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1127	1134	1A,m8	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-124.1	1080	1087	1A,m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	1079	1086	1A,m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	1079	1086	1A,m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-125/351	324	330	1A	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	324	330	1A	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-142-5p	1694	1700	1A	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-143	1180	1187	1A,m8	hsa-miR-143^brain	UGAGAUGAAGCACUGUAGCUCA
miR-148/152	1281	1287	m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-151	1207	1214	1A,m8	hsa-miR-151^brain	ACUAGACUGAAGCUCCUUGAGG
miR-199	1600	1606	1A	hsa-miR-199a	CCCAGUGUUCAGACUACCUGUUC
miR-199	1600	1606	1A	hsa-miR-199b	CCCAGUGUUUAGACUAUCUGUUC
miR-219	550	556	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-219	550	556	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-221/222	1214	1220	m8	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
				hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
				hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
				hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-26	1539	1546	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1539	1546	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-34b	336	342	m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-363	1664	1670	1A	hsa-miR-363	AUUGCACGGUAUCCAUCUGUAA
miR-375	547	553	m8	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-539	606	612	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-9	595	601	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-9	595	601	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.