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Gene Page: SPG20

Summary

GeneID

23111

Symbol

SPG20

Synonyms

KIAA0610|SPARTIN|TAHCCP1

Description

spastic paraplegia 20 (Troyer syndrome)

Locus tag

Gene type

protein-coding

Map location

13q13.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Interactions

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
TUBA1A	B-ALPHA-1 \| FLJ25113 \| LIS3 \| TUBA3	tubulin, alpha 1a	FRET	BioGRID	16945107

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-130/301	437	444	1A,m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-19	436	442	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	436	442	m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-21	486	492	1A	hsa-miR-21^brain	UAGCUUAUCAGACUGAUGUUGA
miR-21	486	492	1A	hsa-miR-590	GAGCUUAUUCAUAAAAGUGCAG
miR-9	23	29	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.