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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: LPHN2

Summary

GeneID

23266

Symbol

LPHN2

Synonyms

CIRL2|CL2|LEC1|LPHH1

Description

latrophilin 2

Locus tag

Gene type

protein-coding

Map location

1p31.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.02692

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 2

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

SNRNP200

0.97

0.95

MED12

0.97

0.96

MTA2

0.96

0.95

ABL1

0.96

NUP62

0.96

0.94

GEMIN4

0.96

0.93

PATZ1

0.96

0.94

CASP2

0.95

0.93

SMARCD1

0.95

0.93

KIAA1267

0.95

Top 10 negatively co-expressed genes

C5orf53

-0.72

-0.78

AF347015.31

-0.70

-0.87

AF347015.27

-0.69

-0.86

MT-CO2

-0.68

-0.87

IFI27

-0.67

-0.82

S100B

-0.67

-0.78

AF347015.33

-0.67

-0.83

FXYD1

-0.66

-0.81

MT-CYB

-0.65

-0.83

HLA-F

-0.65

-0.68

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016524

latrotoxin receptor activity

NAS

Synap (GO term level: 6)

10030676

GO:0004872

receptor activity

IEA

GO:0003674

molecular_function

GO:0005529

sugar binding

IEA

GO:0004930

G-protein coupled receptor activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007218

neuropeptide signaling pathway

IEA

Neurotransmitter (GO term level: 8)

GO:0007186

G-protein coupled receptor protein signaling pathway

IEA

GO:0007165

signal transduction

IEA

GO:0008150

biological_process

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005575

cellular_component

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

NAS

10030676

GO:0005886

plasma membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
SHANK1	SPANK-1 \| SSTRIP \| synamon	SH3 and multiple ankyrin repeat domains 1	Two-hybrid	BioGRID	10964907
SHANK2	CORTBP1 \| CTTNBP1 \| ProSAP1 \| SHANK \| SPANK-3	SH3 and multiple ankyrin repeat domains 2	-	HPRD,BioGRID	10964907

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-15/16/195/424/497	258	264	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-182	863	870	1A,m8	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-186	1042	1048	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	731	737	1A	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
				hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
				hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
				hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-194	216	222	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-23	1259	1266	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	1259	1266	1A,m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-27	151	157	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	151	157	1A	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-323	1259	1265	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-335	723	729	m8	hsa-miR-335^brain	UCAAGAGCAAUAACGAAAAAUGU
miR-369-3p	375	382	1A,m8	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-370	455	461	1A	hsa-miR-370^brain	GCCUGCUGGGGUGGAACCUGG
miR-374	376	382	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-375	1027	1033	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-381	181	187	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-410	378	384	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-433-3p	597	603	1A	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU
miR-493-5p	580	586	1A	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-495	214	220	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-7	1081	1087	1A	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG
miR-96	864	870	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.