Gene Page: RPGRIP1L

Summary
GeneID  23322
Symbol  RPGRIP1L
Synonyms  CORS3|DKFZp686C0668|JBTS7|KIAA1005|MKS5|NPHP8
Description  RPGRIP1-like
See related  HGNC:29168|MIM:610937|Ensembl:ENSG00000103494|HPRD:17204|
Locus tag  -
Gene type  protein-coding
Map location  16q12.2
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 4 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
TSN0.920.90
ARMC10.910.91
VPS37A0.900.89
UBA20.900.93
ELP30.900.87
KPNA40.890.89
SMU10.890.87
CNOT70.890.88
RBM180.890.89
MAPKSP10.890.87
Top 10 negatively co-expressed genes
MT-CO2-0.75-0.75
AF347015.8-0.73-0.75
MT-CYB-0.72-0.74
AF347015.33-0.71-0.72
AF347015.31-0.71-0.73
AF347015.21-0.70-0.72
AF347015.26-0.70-0.72
AF347015.2-0.69-0.70
AF347015.15-0.69-0.73
AF347015.27-0.68-0.71
Gene Ontology
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007420brain developmentIEABrain (GO term level: 7)-
GO:0022038corpus callosum developmentIEAaxon (GO term level: 10)-
GO:0021549cerebellum developmentIEABrain (GO term level: 10)-
GO:0021772olfactory bulb developmentIEAneuron (GO term level: 11)-
GO:0001701in utero embryonic developmentIEA-
GO:0001889liver developmentIEA-
GO:0001822kidney developmentIEA-
GO:0007368determination of left/right symmetryIEA-
GO:0008589regulation of smoothened signaling pathwayIEA-
GO:0007382specification of segmental identity, maxillary segmentIEA-
GO:0021532neural tube patterningIEA-
GO:0042305specification of segmental identity, mandibular segmentIEA-
GO:0042384cilium biogenesisIEA-
GO:0021670lateral ventricle developmentIEA-
GO:0043010camera-type eye developmentIEA-
GO:0035108limb morphogenesisIEA-
GO:0035115embryonic forelimb morphogenesisIEA-
GO:0035116embryonic hindlimb morphogenesisIEA-
GO:0043584nose developmentIEA-
GO:0060039pericardium developmentIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005813centrosomeIDA17558409 
GO:0005737cytoplasmIDA17558409 
GO:0005932basal bodyIDA17558409 
GO:0005929ciliumIDA17558409 
GO:0035085cilium axonemeIDA17558409 
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-103/107100810151A,m8hsa-miR-103brainAGCAGCAUUGUACAGGGCUAUGA
hsa-miR-107brainAGCAGCAUUGUACAGGGCUAUCA
miR-125/351116611721Ahsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-1284534591Ahsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
miR-13315401546m8hsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-136991997m8hsa-miR-136ACUCCAUUUGUUUUGAUGAUGGA
miR-1374724791A,m8hsa-miR-137UAUUGCUUAAGAAUACGCGUAG
miR-144451457m8hsa-miR-144UACAGUAUAGAUGAUGUACUAG
miR-185172117271Ahsa-miR-185brainUGGAGAGAAAGGCAGUUC
miR-196119311991Ahsa-miR-196aUAGGUAGUUUCAUGUUGUUGG
hsa-miR-196bUAGGUAGUUUCCUGUUGUUGG
miR-203.1104910551Ahsa-miR-203UGAAAUGUUUAGGACCACUAG
hsa-miR-203UGAAAUGUUUAGGACCACUAG
miR-2166268m8hsa-miR-216UAAUCUCAGCUGGCAACUGUG
miR-217185318591Ahsa-miR-217UACUGCAUCAGGAACUGAUUGGAU
miR-22139814041Ahsa-miR-22brainAAGCUGCCAGUUGAAGAACUGU
miR-2799810041Ahsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
hsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
miR-28130813141Ahsa-miR-28brainAAGGAGCUCACAGUCUAUUGAG
miR-323498504m8hsa-miR-323brainGCACAUUACACGGUCGACCUCU
miR-34/4491972031Ahsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-37712751281m8hsa-miR-377AUCACACAAAGGCAACUUUUGU
miR-3811501561Ahsa-miR-381UAUACAAGGGCAAGCUCUCUGU
miR-409-3p132113281A,m8hsa-miR-409-3pCGAAUGUUGCUCGGUGAACCCCU
miR-452112511321A,m8hsa-miR-452UGUUUGCAGAGGAAACUGAGAC
miR-488900906m8hsa-miR-488CCCAGAUAAUGGCACUCUCAA
miR-49517481754m8hsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
miR-496115511611Ahsa-miR-496AUUACAUGGCCAAUCUC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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