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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: OTP

Summary

GeneID

23440

Symbol

OTP

Synonyms

MGC3161

Description

orthopedia homeobox

Locus tag

Gene type

protein-coding

Map location

5q13.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003700

transcription factor activity

IEA

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007399

nervous system development

IEA

neurite (GO term level: 5)

GO:0002052

positive regulation of neuroblast proliferation

IEA

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0007275

multicellular organismal development

IEA

GO:0021985

neurohypophysis development

IEA

GO:0021979

hypothalamus cell differentiation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
BENPORATH_SUZ12_TARGETS	1038	678	All SZGR genes in this pathway
BENPORATH_EED_TARGETS	1062	725	All SZGR genes in this pathway
BENPORATH_ES_WITH_H3K27ME3	1118	744	All SZGR genes in this pathway
BENPORATH_PRC2_TARGETS	652	441	All SZGR genes in this pathway
SHEPARD_BMYB_MORPHOLINO_DN	200	112	All SZGR genes in this pathway
SHEPARD_BMYB_TARGETS	74	41	All SZGR genes in this pathway
SHEPARD_CRUSH_AND_BURN_MUTANT_DN	185	111	All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS	882	572	All SZGR genes in this pathway
HANN_RESISTANCE_TO_BCL2_INHIBITOR_DN	48	31	All SZGR genes in this pathway
MEISSNER_NPC_HCP_WITH_H3K27ME3	79	59	All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K27ME3	269	159	All SZGR genes in this pathway
MIKKELSEN_IPS_WITH_HCP_H3K27ME3	102	76	All SZGR genes in this pathway
MIKKELSEN_NPC_HCP_WITH_H3K27ME3	341	243	All SZGR genes in this pathway
MIKKELSEN_MEF_HCP_WITH_H3K27ME3	590	403	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-194	1377	1383	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-208	677	683	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-218	656	662	1A	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-219	1265	1271	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-23	1340	1346	1A	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	1340	1346	1A	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-326	1303	1310	1A,m8	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-375	1332	1338	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-499	677	683	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-503	1142	1148	m8	hsa-miR-503	UAGCAGCGGGAACAGUUCUGCAG
miR-544	554	560	1A	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.