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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Gene Page: SNAPIN

Summary

GeneID

23557

Symbol

SNAPIN

Synonyms

SNAPAP

Description

SNAP-associated protein

Locus tag

Gene type

protein-coding

Map location

1q21.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.00814

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 3

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 9.7664

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000149

SNARE binding

TAS

10195194

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007269

neurotransmitter secretion

TAS

neuron, axon, Synap, serotonin, Neurotransmitter, dopamine (GO term level: 8)

10195194

GO:0006886

intracellular protein transport

TAS

10195194

GO:0006887

exocytosis

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008021

synaptic vesicle

TAS

Synap, Neurotransmitter (GO term level: 12)

10195194

GO:0019717

synaptosome

IEA

Synap, Brain (GO term level: 7)

GO:0045202

synapse

IEA

neuron, Synap, Neurotransmitter, Glial (GO term level: 2)

GO:0005737

cytoplasm

IEA

GO:0016020

membrane

IEA

GO:0030054

cell junction

IEA

GO:0031410

cytoplasmic vesicle

IEA

GO:0030659

cytoplasmic vesicle membrane

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BLOC1S1	BLOS1 \| FLJ39337 \| FLJ97089 \| GCN5L1 \| MGC87455 \| MICoA \| RT14	biogenesis of lysosomal organelles complex-1, subunit 1	Snapin interacts with BLOS1.	BIND	15102850
BLOC1S1		biogenesis of lysosomal organelles complex-1, subunit 1	Two-hybrid	BioGRID	15102850
BLOC1S2	BLOS2 \| FLJ30135 \| MGC10120 \| RP11-316M21.4	biogenesis of lysosomal organelles complex-1, subunit 2	-	HPRD,BioGRID	15102850
BLOC1S2	BLOS2 \| FLJ30135 \| MGC10120 \| RP11-316M21.4	biogenesis of lysosomal organelles complex-1, subunit 2	Snapin interacts with BLOS2.	BIND	15102850
BLOC1S3	BLOS3 \| FLJ26641 \| FLJ26676 \| HPS8 \| RP	biogenesis of lysosomal organelles complex-1, subunit 3	-	HPRD,BioGRID	15102850
CNO	BCAS4L \| FLJ11230	cappuccino homolog (mouse)	Snapin interacts with Cappuccino.	BIND	15102850
CNO	BCAS4L \| FLJ11230	cappuccino homolog (mouse)	-	HPRD,BioGRID	15102850
DDR1	CAK \| CD167 \| DDR \| EDDR1 \| MCK10 \| NEP \| NTRK4 \| PTK3 \| PTK3A \| RTK6 \| TRKE	discoidin domain receptor tyrosine kinase 1	Two-hybrid	BioGRID	16169070
DTNBP1	DBND \| DKFZp564K192 \| FLJ30031 \| HPS7 \| MGC20210 \| My031 \| SDY	dystrobrevin binding protein 1	Affinity Capture-Western Two-hybrid	BioGRID	15102850
DTNBP1		dystrobrevin binding protein 1	Snapin interacts with Dysbindin.	BIND	15102850
EBAG9	EB9 \| PDAF \| RCAS1	estrogen receptor binding site associated, antigen, 9	EBAG9 interacts with Snapin.	BIND	15635093
EEF1G	EF1G \| GIG35	eukaryotic translation elongation factor 1 gamma	Two-hybrid	BioGRID	16169070
GPRASP1	GASP \| GASP1 \| KIAA0443	G protein-coupled receptor associated sorting protein 1	Two-hybrid	BioGRID	16169070
HAP1	HAP2 \| HIP5 \| HLP \| hHLP1	huntingtin-associated protein 1	Two-hybrid	BioGRID	16169070
IKBKAP	DKFZp781H1425 \| DYS \| ELP1 \| FD \| FLJ12497 \| IKAP \| IKI3 \| TOT1	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	Two-hybrid	BioGRID	16169070
IMMT	DKFZp779P1653 \| HMP \| MGC111146 \| P87 \| P87/89 \| P89 \| PIG4 \| PIG52	inner membrane protein, mitochondrial (mitofilin)	Two-hybrid	BioGRID	16169070
KAT5	ESA1 \| HTATIP \| HTATIP1 \| PLIP \| TIP \| TIP60 \| cPLA2	K(lysine) acetyltransferase 5	Two-hybrid	BioGRID	16169070
KIF5C	FLJ44735 \| KIAA0531 \| KINN \| MGC111478 \| NKHC \| NKHC-2 \| NKHC2	kinesin family member 5C	Two-hybrid	BioGRID	16169070
LAMC1	LAMB2 \| MGC87297	laminin, gamma 1 (formerly LAMB2)	Two-hybrid	BioGRID	16169070
LRP12	DKFZp781F1053 \| FLJ12929 \| ST7	low density lipoprotein-related protein 12	-	HPRD	12809483
MYST2	HBO1 \| HBOA \| KAT7	MYST histone acetyltransferase 2	Two-hybrid	BioGRID	16169070
PLDN	PA \| PALLID	pallidin homolog (mouse)	-	HPRD,BioGRID	15102850
RGS7	-	regulator of G-protein signaling 7	-	HPRD,BioGRID	12659861
SNAP23	HsT17016 \| SNAP23A \| SNAP23B	synaptosomal-associated protein, 23kDa	SNAP23 interacts with Snapin.	BIND	15635093
SNAP23	HsT17016 \| SNAP23A \| SNAP23B	synaptosomal-associated protein, 23kDa	-	HPRD,BioGRID	12877659
SNAP25	FLJ23079 \| RIC-4 \| RIC4 \| SEC9 \| SNAP \| SNAP-25 \| bA416N4.2 \| dJ1068F16.2	synaptosomal-associated protein, 25kDa	-	HPRD,BioGRID	10195194
SNAP25		synaptosomal-associated protein, 25kDa	SNAP25 interacts with Snapin.	BIND	15635093
SPAG5	DEEPEST \| MAP126 \| hMAP126	sperm associated antigen 5	Two-hybrid	BioGRID	16169070
ST7	DKFZp762O2113 \| ETS7q \| FAM4A \| FAM4A1 \| HELG \| RAY1 \| SEN4 \| TSG7	suppression of tumorigenicity 7	Two-hybrid	BioGRID	12809483
TRPV1	DKFZp434K0220 \| VR1	transient receptor potential cation channel, subfamily V, member 1	Affinity Capture-Western Reconstituted Complex Two-hybrid	BioGRID	15066994

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
REACTOME_MEMBRANE_TRAFFICKING	129	74	All SZGR genes in this pathway
REACTOME_TRANS_GOLGI_NETWORK_VESICLE_BUDDING	60	31	All SZGR genes in this pathway
REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS	53	27	All SZGR genes in this pathway
KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	1278	748	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN	770	415	All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_DN	394	258	All SZGR genes in this pathway
LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER	214	139	All SZGR genes in this pathway
MORI_LARGE_PRE_BII_LYMPHOCYTE_DN	58	39	All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS	882	572	All SZGR genes in this pathway
BURTON_ADIPOGENESIS_11	57	40	All SZGR genes in this pathway
ZHANG_BREAST_CANCER_PROGENITORS_UP	425	253	All SZGR genes in this pathway
ROME_INSULIN_TARGETS_IN_MUSCLE_UP	442	263	All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_DN	841	431	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_A	898	516	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway