Gene Page

Gene Page: PAN3

Summary

GeneID

255967

Symbol

PAN3

Synonyms

Description

PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)

Locus tag

RP11-179F17.3

Gene type

protein-coding

Map location

13q12.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.463

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005524

ATP binding

IEA

GO:0004672

protein kinase activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000184

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

IEA

GO:0006468

protein amino acid phosphorylation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ETF1	D5S1995 \| ERF \| ERF1 \| MGC111066 \| RF1 \| SUP45L1 \| TB3-1	eukaryotic translation termination factor 1	Reconstituted Complex	BioGRID	18056425
PABPC1	PAB1 \| PABP \| PABP1 \| PABPC2 \| PABPL1	poly(A) binding protein, cytoplasmic 1	Affinity Capture-Western Reconstituted Complex	BioGRID	18056425
PAN2	FLJ39360 \| KIAA0710 \| USP52 \| hPAN2	PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	-	HPRD,BioGRID	14583602

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	1071	1077	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	1071	1077	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-129-5p	1888	1894	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	1888	1894	1A	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-130/301	54	61	1A,m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
				hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-133	2040	2046	1A	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	2040	2046	1A	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-138	2110	2116	1A	hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
miR-182	1277	1283	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-186	1877	1883	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-194	144	150	m8	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-199	955	962	1A,m8	hsa-miR-199a	CCCAGUGUUCAGACUACCUGUUC
miR-199	955	962	1A,m8	hsa-miR-199b	CCCAGUGUUUAGACUAUCUGUUC
miR-21	1517	1523	m8	hsa-miR-21^brain	UAGCUUAUCAGACUGAUGUUGA
miR-21	1517	1523	m8	hsa-miR-590	GAGCUUAUUCAUAAAAGUGCAG
miR-26	148	155	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	148	155	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-320	935	942	1A,m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-320	935	942	1A,m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-330	1586	1592	1A	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-34/449	1275	1281	1A	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-362	1727	1733	1A	hsa-miR-362	AAUCCUUGGAACCUAGGUGUGAGU
miR-381	1901	1907	m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-488	1687	1693	1A	hsa-miR-488	CCCAGAUAAUGGCACUCUCAA
miR-493-5p	1884	1890	1A	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-539	1498	1504	m8	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-93.hd/291-3p/294/295/302/372/373/520	1423	1429	m8	hsa-miR-93^brain	AAAGUGCUGUUCGUGCAGGUAG
				hsa-miR-302a	UAAGUGCUUCCAUGUUUUGGUGA
				hsa-miR-302b	UAAGUGCUUCCAUGUUUUAGUAG
				hsa-miR-302c	UAAGUGCUUCCAUGUUUCAGUGG
				hsa-miR-302d	UAAGUGCUUCCAUGUUUGAGUGU
				hsa-miR-372	AAAGUGCUGCGACAUUUGAGCGU
				hsa-miR-373	GAAGUGCUUCGAUUUUGGGGUGU
				hsa-miR-520e	AAAGUGCUUCCUUUUUGAGGG
				hsa-miR-520a	AAAGUGCUUCCCUUUGGACUGU
				hsa-miR-520b	AAAGUGCUUCCUUUUAGAGGG
				hsa-miR-520c	AAAGUGCUUCCUUUUAGAGGGUU
				hsa-miR-520d	AAAGUGCUUCUCUUUGGUGGGUU
miR-96	1277	1283	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.