Gene Page

Gene Page: SLITRK5

Summary

GeneID

26050

Symbol

SLITRK5

Synonyms

FLJ58374|KIAA0918|LRRC11|bA364G4.2

Description

SLIT and NTRK-like family, member 5

Locus tag

Gene type

protein-coding

Map location

13q31.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
BENPORATH_SUZ12_TARGETS	1038	678	All SZGR genes in this pathway
ONDER_CDH1_TARGETS_2_UP	256	159	All SZGR genes in this pathway
WANG_SMARCE1_TARGETS_DN	371	218	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_14HR_DN	298	200	All SZGR genes in this pathway
DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN	287	208	All SZGR genes in this pathway
BASSO_HAIRY_CELL_LEUKEMIA_DN	80	66	All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_UP	857	456	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway
KIM_ALL_DISORDERS_CALB1_CORR_UP	548	370	All SZGR genes in this pathway
PURBEY_TARGETS_OF_CTBP1_NOT_SATB1_UP	344	215	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	107	113	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	107	113	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-194	1274	1280	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-221/222	722	728	1A	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	722	728	1A	hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-346	49	55	1A	hsa-miR-346^brain	UGUCUGCCCGCAUGCCUGCCUCU
miR-455	204	210	m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-493-5p	1183	1189	1A	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-496	1301	1307	m8	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.