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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: PLDN

Summary

GeneID

26258

Symbol

PLDN

Synonyms

PA|PALLID

Description

pallidin homolog (mouse)

Locus tag

Gene type

protein-coding

Map location

15q21.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 1.5219

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0042802

identical protein binding

IPI

15102850

GO:0030349

syntaxin-13 binding

TAS

10610180

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016081

synaptic vesicle docking during exocytosis

NAS

Synap (GO term level: 10)

10610180

GO:0006944

membrane fusion

IEA

GO:0043473

pigmentation

IEA

GO:0030318

melanocyte differentiation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0012505

endomembrane system

IEA

GO:0005575

cellular_component

GO:0005737

cytoplasm

IEA

GO:0005768

endosome

IEA

GO:0016020

membrane

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ACTA1	ACTA \| ASMA \| CFTD \| CFTD1 \| CFTDM \| MPFD \| NEM1 \| NEM2 \| NEM3	actin, alpha 1, skeletal muscle	-	HPRD	12019270
AGGF1	FLJ10283 \| GPATC7 \| GPATCH7 \| HSU84971 \| HUS84971 \| VG5Q	angiogenic factor with G patch and FHA domains 1	Two-hybrid	BioGRID	16189514
BLOC1S1	BLOS1 \| FLJ39337 \| FLJ97089 \| GCN5L1 \| MGC87455 \| MICoA \| RT14	biogenesis of lysosomal organelles complex-1, subunit 1	-	HPRD,BioGRID	15102850
BLOC1S1		biogenesis of lysosomal organelles complex-1, subunit 1	Pallidin interacts with BLOS1.	BIND	15102850
BLOC1S2	BLOS2 \| FLJ30135 \| MGC10120 \| RP11-316M21.4	biogenesis of lysosomal organelles complex-1, subunit 2	-	HPRD,BioGRID	15102850
BLOC1S3	BLOS3 \| FLJ26641 \| FLJ26676 \| HPS8 \| RP	biogenesis of lysosomal organelles complex-1, subunit 3	-	HPRD,BioGRID	15102850
C18orf24	MGC10200 \| Ska1	chromosome 18 open reading frame 24	Two-hybrid	BioGRID	16189514
C1orf190	FLJ25163	chromosome 1 open reading frame 190	Two-hybrid	BioGRID	16189514
CCDC53	CGI-116	coiled-coil domain containing 53	Two-hybrid	BioGRID	16189514
CNO	BCAS4L \| FLJ11230	cappuccino homolog (mouse)	Pallidin interacts with Cappuccino.	BIND	15102850
CNO	BCAS4L \| FLJ11230	cappuccino homolog (mouse)	-	HPRD,BioGRID	15102850
DTNBP1	DBND \| DKFZp564K192 \| FLJ30031 \| HPS7 \| MGC20210 \| My031 \| SDY	dystrobrevin binding protein 1	Pallidin interacts with Dysbindin.	BIND	15102850
DTNBP1		dystrobrevin binding protein 1	-	HPRD,BioGRID	15102850
EPS8	-	epidermal growth factor receptor pathway substrate 8	Two-hybrid	BioGRID	16189514
EXOC8	EXO84 \| Exo84p \| SEC84	exocyst complex component 8	Two-hybrid	BioGRID	16189514
MUTED	DKFZp686E2287 \| MU	muted homolog (mouse)	-	HPRD,BioGRID	12019270
NDC80	HEC \| HEC1 \| KNTC2 \| TID3 \| hsNDC80	NDC80 homolog, kinetochore complex component (S. cerevisiae)	Two-hybrid	BioGRID	16189514
PLDN	PA \| PALLID	pallidin homolog (mouse)	Two-hybrid	BioGRID	15102850 \|16189514
PLDN	PA \| PALLID	pallidin homolog (mouse)	Pallidin interacts with Pallidin.	BIND	15102850
PLEKHF2	FLJ13187 \| PHAFIN2 \| ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	Two-hybrid	BioGRID	16189514
SLC4A1	AE1 \| BND3 \| CD233 \| DI \| EMPB3 \| EPB3 \| FR \| MGC116750 \| MGC116753 \| MGC126619 \| MGC126623 \| RTA1A \| SW \| WD \| WD1 \| WR	solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)	-	HPRD	2968981
SNAPIN	SNAPAP	SNAP-associated protein	-	HPRD,BioGRID	15102850
STX12	MGC51957 \| STX13 \| STX14	syntaxin 12	-	HPRD,BioGRID	10610180
WDYHV1	C8orf32 \| FLJ10204	WDYHV motif containing 1	Two-hybrid	BioGRID	16189514

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1613	1619	m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-124.1	80	86	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	79	86	1A,m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	79	86	1A,m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-196	1612	1618	m8	hsa-miR-196a	UAGGUAGUUUCAUGUUGUUGG
miR-196	1612	1618	m8	hsa-miR-196b	UAGGUAGUUUCCUGUUGUUGG
miR-383	1618	1625	1A,m8	hsa-miR-383^brain	AGAUCAGAAGGUGAUUGUGGCU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.