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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: NBEA

Summary

GeneID

26960

Symbol

NBEA

Synonyms

BCL8B|LYST2

Description

neurobeachin

Locus tag

RP11-270C18.1

Gene type

protein-coding

Map location

13q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.1835

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005488

binding

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0012505

endomembrane system

ISS

GO:0005802

trans-Golgi network

ISS

GO:0005829

cytosol

ISS

GO:0005737

cytoplasm

IEA

GO:0005886

plasma membrane

ISS

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
PRKAR2A	MGC3606 \| PKR2 \| PRKAR2	protein kinase, cAMP-dependent, regulatory, type II, alpha	-	HPRD	11102458
PRKAR2B	PRKAR2 \| RII-BETA	protein kinase, cAMP-dependent, regulatory, type II, beta	-	HPRD	11102458
STRN4	FLJ35594 \| ZIN \| zinedin	striatin, calmodulin binding protein 4	Two-hybrid	BioGRID	16169070

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN	349	157	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_UP	1821	933	All SZGR genes in this pathway
GOZGIT_ESR1_TARGETS_DN	781	465	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
FARMER_BREAST_CANCER_BASAL_VS_LULMINAL	330	215	All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN	428	306	All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP	283	177	All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_STEM_CELL_LONG_TERM	302	191	All SZGR genes in this pathway
XU_GH1_AUTOCRINE_TARGETS_DN	142	94	All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_DN	701	446	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_D_DN	252	155	All SZGR genes in this pathway
MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN	67	46	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_PCA1_UP	101	66	All SZGR genes in this pathway
WONG_ADULT_TISSUE_STEM_MODULE	721	492	All SZGR genes in this pathway
LU_EZH2_TARGETS_DN	414	237	All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_6HR_DN	91	56	All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_24HR_DN	505	328	All SZGR genes in this pathway
GABRIELY_MIR21_TARGETS	289	187	All SZGR genes in this pathway
BILANGES_SERUM_AND_RAPAMYCIN_SENSITIVE_GENES	68	35	All SZGR genes in this pathway
TORCHIA_TARGETS_OF_EWSR1_FLI1_FUSION_UP	271	165	All SZGR genes in this pathway
RATTENBACHER_BOUND_BY_CELF1	467	251	All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY	1839	928	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-129-5p	1712	1718	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	1712	1718	1A	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-130/301	672	678	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-135	736	742	m8	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
miR-135	736	742	m8	hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-137	1536	1543	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-138	184	190	m8	hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
miR-148/152	1442	1448	1A	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-153	1731	1737	1A	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-17-5p/20/93.mr/106/519.d	674	680	m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
				hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-181	1282	1288	1A	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-188	453	460	1A,m8	hsa-miR-188	CAUCCCUUGCAUGGUGGAGGGU
miR-19	1368	1374	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
				hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
				hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
				hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-190	1380	1387	1A,m8	hsa-miR-190	UGAUAUGUUUGAUAUAUUAGGU
miR-194	336	342	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-203.1	1598	1604	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-204/211	452	458	m8	hsa-miR-204^brain	UUCCCUUUGUCAUCCUAUGCCU
miR-204/211	452	458	m8	hsa-miR-211	UUCCCUUUGUCAUCCUUCGCCU
miR-21	1646	1652	1A	hsa-miR-21^brain	UAGCUUAUCAGACUGAUGUUGA
miR-21	1646	1652	1A	hsa-miR-590	GAGCUUAUUCAUAAAAGUGCAG
miR-218	38	44	1A	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-330	351	357	1A	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-331	1178	1184	m8	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA
miR-342	1697	1703	m8	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-377	1696	1702	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-381	1212	1218	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-381	1212	1218	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-409-5p	1655	1661	1A	hsa-miR-409-5p	AGGUUACCCGAGCAACUUUGCA
miR-421	1266	1273	1A,m8	hsa-miR-421	GGCCUCAUUAAAUGUUUGUUG
miR-448	1730	1737	1A,m8	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-485-5p	379	385	m8	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-488	1582	1588	1A	hsa-miR-488	CCCAGAUAAUGGCACUCUCAA
miR-493-5p	1241	1247	m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-494	1201	1207	m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-496	1677	1683	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-496	1677	1683	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-500	562	568	m8	hsa-miR-500	AUGCACCUGGGCAAGGAUUCUG
miR-539	1291	1297	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.