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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: BAZ2B

Summary

GeneID

29994

Symbol

BAZ2B

Synonyms

DKFZp434H071|DKFZp762I0516|FLJ45644|WALp4

Description

bromodomain adjacent to zinc finger domain, 2B

Locus tag

Gene type

protein-coding

Map location

2q23-q24

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.02395

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003677

DNA binding

IEA

GO:0005515

protein binding

IEA

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CTBP2	-	C-terminal binding protein 2	Two-hybrid	BioGRID	16189514

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
ONKEN_UVEAL_MELANOMA_UP	783	507	All SZGR genes in this pathway
DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_UP	368	234	All SZGR genes in this pathway
BASAKI_YBX1_TARGETS_DN	384	230	All SZGR genes in this pathway
WANG_LMO4_TARGETS_DN	352	225	All SZGR genes in this pathway
SENESE_HDAC1_TARGETS_DN	260	143	All SZGR genes in this pathway
KIM_WT1_TARGETS_DN	459	276	All SZGR genes in this pathway
KIM_WT1_TARGETS_8HR_DN	129	84	All SZGR genes in this pathway
KIM_WT1_TARGETS_12HR_DN	209	122	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
GAUSSMANN_MLL_AF4_FUSION_TARGETS_G_UP	238	135	All SZGR genes in this pathway
HAMAI_APOPTOSIS_VIA_TRAIL_UP	584	356	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	855	609	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN	483	336	All SZGR genes in this pathway
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP	811	508	All SZGR genes in this pathway
LOPEZ_MBD_TARGETS	957	597	All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN	514	330	All SZGR genes in this pathway
SHEN_SMARCA2_TARGETS_UP	424	268	All SZGR genes in this pathway
DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_UP	314	201	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
DAZARD_RESPONSE_TO_UV_SCC_DN	123	86	All SZGR genes in this pathway
LU_AGING_BRAIN_UP	262	186	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_UP	428	266	All SZGR genes in this pathway
DAZARD_RESPONSE_TO_UV_NHEK_DN	318	220	All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP	953	554	All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP	783	442	All SZGR genes in this pathway
RUIZ_TNC_TARGETS_UP	153	107	All SZGR genes in this pathway
ZHAN_MULTIPLE_MYELOMA_PR_DN	44	34	All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_24HR_DN	505	328	All SZGR genes in this pathway
TORCHIA_TARGETS_OF_EWSR1_FLI1_FUSION_UP	271	165	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	892	898	m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	892	898	m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-124.1	768	774	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	768	774	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	768	774	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-128	1094	1100	m8	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
				hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-139	593	600	1A,m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-140	441	448	1A,m8	hsa-miR-140^brain	AGUGGUUUUACCCUAUGGUAG
miR-148/152	303	309	1A	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-181	407	414	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-186	1217	1223	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-200bc/429	1021	1027	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-221/222	781	787	1A	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	781	787	1A	hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-25/32/92/363/367	274	281	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	1173	1180	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1173	1180	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-27	466	472	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	466	472	1A	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-299-5p	440	446	1A	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-5p	551	558	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-339	229	235	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-369-3p	729	735	m8	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-377	200	206	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-409-5p	1089	1095	1A	hsa-miR-409-5p	AGGUUACCCGAGCAACUUUGCA
miR-410	932	939	1A,m8	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-410	932	939	1A,m8	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-455	86	93	1A,m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-495	929	935	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-543	515	521	m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-9	243	249	1A	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.