Gene Page: LRRTM1

Summary
GeneID  347730
Symbol  LRRTM1
Synonyms  FLJ32082
Description  leucine rich repeat transmembrane neuronal 1
See related  HGNC:19408|MIM:610867|Ensembl:ENSG00000162951|HPRD:14323|
Locus tag  -
Gene type  protein-coding
Map location  2p12
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0004 
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 2 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003674molecular_functionND-
GO:0005515protein bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0008150biological_processND-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0030426growth coneIDAaxon, dendrite (GO term level: 5)17667961 
GO:0030424axonIDAneuron, axon, Neurotransmitter (GO term level: 6)17667961 
GO:0005789endoplasmic reticulum membraneIEA-
GO:0005783endoplasmic reticulumIDA17667961 
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
GO:0009986cell surfaceIDA17667961 
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-2081641701Ahsa-miR-208AUAAGACGAGCAAAAAGCUUGU
miR-30-3p111117m8hsa-miR-30a-3pCUUUCAGUCGGAUGUUUGCAGC
hsa-miR-30e-3pCUUUCAGUCGGAUGUUUACAGC
miR-3201531591Ahsa-miR-320AAAAGCUGGGUUGAGAGGGCGAA
miR-3261341411A,m8hsa-miR-326CCUCUGGGCCCUUCCUCCAG
miR-3782822881Ahsa-miR-378CUCCUGACUCCAGGUCCUGUGU
miR-4991641701Ahsa-miR-499UUAAGACUUGCAGUGAUGUUUAA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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